Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq685 363 5e-98 seq771 327 3e-87 >seq685 Length=65961 Score = 363 bits (402), Expect = 5e-98 Identities = 385/502 (77%), Gaps = 13/502 (3%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| | |||||||||| |||||||||||||||||||||||||||||| || Sbjct 64547 TACGGTCGCAAGACTAAAACTCAAAGAAATTGACGGGGACCCGCACAAGCGGTGGAGTAT 64606 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCC---TCTGACCC 117 |||| ||||||||| |||||||||||||||||||| |||||||| ||| | | Sbjct 64607 GTGGCTTAATTCGATGCAACGCGAAGAACCTTACCTGGGCTTGACATGGATTTCTAAGCA 64666 Query 118 CTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGT 177 | | || || | | |||||||||| || ||||||| ||||||| ||||| Sbjct 64667 C----GTGAAAGCGTGTGACCCTTCGGGGAACTTCC--ACAGGTGCTGCATGGCCGTCGT 64720 Query 178 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGT 237 ||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| Sbjct 64721 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTGATCAGT 64780 Query 238 TGCCA--TCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTG 295 ||||| | | | | ||| ||||| ||||||| ||| ||||||||||| Sbjct 64781 TGCCAGCGCGTCATGGCGGGAACTCTGGTCAGACTGCCCAGATCAACTGGGAGGAAGGTG 64840 Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355 |||||||||||| ||| ||| |||||| | ||||| ||||||| |||||||| | Sbjct 64841 GGGACGACGTCAGGTCAGTATGGCCCTTACGCCCAGGGCTGCACACGTACTACAATGCCC 64900 Query 356 AATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCG 415 | ||||| | | | ||| ||||||||| || |||| | |||| || | ||||||| Sbjct 64901 AGTACAATGAGAACCGATGCCGCGAGGTGGAGGAAAT-CTGTAAAACTGGGCCCAGTTCG 64959 Query 416 GATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-A 474 ||||| || |||||||||| || |||||| |||||||||||||||| | |||| | | Sbjct 64960 GATTGGAGGCTGCAACTCGCCTCCATGAAGTTGGAATCGCTAGTAATGGCGCATCATCTA 65019 Query 475 TGCTACGGTGAATACGTTCCCG 496 | | ||||||||||||||| Sbjct 65020 CGGCGCCGTGAATACGTTCCCG 65041 >seq771 Length=42375 Score = 327 bits (362), Expect = 3e-87 Identities = 384/509 (75%), Gaps = 20/509 (4%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||||| |||||||||| ||||||||||| || ||||||||||||||| || Sbjct 21628 TACGGCCGCAAGGTTAAAACTCAAAGAAATTGACGGGGGCCTGCACAAGCGGTGGAGTAT 21687 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCT-----GAC 115 |||| ||||||||| |||||||||||||||||||| |||||||| | || Sbjct 21688 GTGGCTTAATTCGATGCAACGCGAAGAACCTTACCTGGCCTTGACATGCAGATGGTAGAA 21747 Query 116 CCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTG-ACAGGTGATGCATGGTTGT 174 ||| | | | || | |||| ||||| | || ||||||| ||||||| ||| Sbjct 21748 GCCTGAAAGGGT-GACGA--CCCCGCAAGGGGA--GTCTGCACAGGTGCTGCATGGCTGT 21802 Query 175 CGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTT 234 |||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 21803 CGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTGTGTCC 21862 Query 235 AGTTGCCATCATTA----AGTT--GGGCACTCTAAGTTGACTGCCGGTGACAAAC-CGGA 287 ||||||| | | |||| | ||||||| ||||||| ||||| ||| Sbjct 21863 TGTTGCCACCGGAACGCGAGTTCCGAGCACTCTGGACAGACTGCCCCGTCCAAACGGGGA 21922 Query 288 GGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTA 347 |||||||||||| |||||||| ||| ||| |||||| | ||||| ||||||| ||| Sbjct 21923 GGAAGGTGGGGATGACGTCAAGTCAGTATGGCCCTTACGGCCAGGGCTGCACACGTACTA 21982 Query 348 CAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTC 407 ||||| | ||||||||| ||| | | || | | |||||||||| ||| | | Sbjct 21983 CAATGCCCGGTACAAAGGGAAGCAAGGCGGCAACGCGGAGCAAATCCC-CAAAACCGGGC 22041 Query 408 TCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAG 467 |||||| |||||| | |||||||||| | ||||||||||||||||||||||| | Sbjct 22042 CCAGTTCAGATTGTCGGCTGCAACTCGCCGGCATGAAGCTGGAATCGCTAGTAATGGCGC 22101 Query 468 ATCAGC-ATGCTACGGTGAATACGTTCCC 495 |||||| | | | |||||||||||||| Sbjct 22102 ATCAGCTACGGCGCCGTGAATACGTTCCC 22130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503981049600