Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq861 372 5e-101 seq669 172 9e-41 >seq861 Length=29000 Score = 372 bits (412), Expect = 5e-101 Identities = 259/294 (88%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||| ||| ||||||| || | ||| |||||||||||||||||||||||||||||| Sbjct 22308 TACTGAGCAGAATTACTATAGCAATGACACTCATCAGTAGGGTAAAACTAACCTGTCTCA 22367 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 22368 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGA 22427 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 22428 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 22487 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || | Sbjct 22488 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCTT 22547 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||| | | | |||||||||||||||| | ||||| ||| |||||||| Sbjct 22548 AAAACCCCTAAAATCAAAAGGATCGATAGGCCCCGCTTTCGCGGTCTGTATTCA 22601 Score = 367 bits (406), Expect = 2e-99 Identities = 259/295 (88%), Gaps = 1/295 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||| ||| ||||||| || | ||| |||||||||||||||||||||||||||||| Sbjct 1559 TACTGAGCAGAATTACTATAGCAATGACACTCATCAGTAGGGTAAAACTAACCTGTCTCA 1618 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1619 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGA 1678 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGG-ATCAAAAAGCAACGTCGCTA 179 |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1679 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGAATCAAAAAGCAACGTCGCTA 1738 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 1739 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 1798 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | | |||||||||||||||| | ||||| ||| |||||||| Sbjct 1799 TAAAACCCCTAAAATCAAAAGGATCGATAGGCCCCGCTTTCGCGGTCTGTATTCA 1853 >seq669 Length=74995 Score = 172 bits (190), Expect = 9e-41 Identities = 116/130 (89%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||| ||| ||||||| || | ||| |||||||||||||||||||||||||||||| Sbjct 73392 TACTGAGCAGAATTACTATAGCAATGACACTCATCAGTAGGGTAAAACTAACCTGTCTCA 73333 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 73332 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGA 73273 Query 121 ATTCTGCTTC 130 |||||||||| Sbjct 73272 ATTCTGCTTC 73263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854389234560