Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq771 194 4e-47 seq685 187 5e-45 >seq771 Length=42375 Score = 194 bits (214), Expect = 4e-47 Identities = 209/271 (77%), Gaps = 8/271 (3%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||| | |||||| ||||| | | | |||||||| | | || ||||||||| |||||| Sbjct 21169 TTTACGAGCCGAAGCCCTTCATCCCC-CACGCGGCGTCG-CTCCATCAGGCTTGCGCCCA 21112 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| || |||| | ||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 21111 TTGTGAAAAATTCTCGACTGCTGCCACCCGTAGGTGTCTGGACCGTGTCTCAGTTCCAGT 21052 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||| || |||||||||||||| ||| || | ||||||||| || ||||| | | Sbjct 21051 GTGGCTGGTCGTCCTCTCAGACCAGCTACCCGTCTTAGCCTTGGTGGGCTTTTACCCCGC 20992 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 ||||||||| || | | |||| ||| | || || ||||| ||||||| ||||| Sbjct 20991 CAACTAGCTGATAGGCCGCGGGCTTATCGTAAAGTGCCAGGCCTTGCGGTCCCCGGCTTT 20932 Query 242 -CTCC---CGTAGGACGTATGCGGTATTAGC 268 |||| || || || || ||||||||| Sbjct 20931 ACTCCTTGCGGAGCAC--ATTGGGTATTAGC 20903 >seq685 Length=65961 Score = 187 bits (206), Expect = 5e-45 Identities = 158/192 (82%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||||||||||||| || | | | |||||||| ||| | |||||| || | |||| Sbjct 64059 TTTACAATCCGAAGACCGTCATCCTC-CACGCGGCGTTG-CACCATCAGGGTTGCCCCCA 64002 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| | ||||| | ||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 64001 TTGTGAATTATTCTCGACTGCTGCCACCCGTAGGTGTCTGGACCGTGTCTCAGTTCCAGT 63942 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||| |||||||||||||| || |||| ||||||||| ||| ||||| | | Sbjct 63941 GTGCCTGATCGTCCTCTCAGACCAGGTATCCGTCGTAGCCTTGGTGGGCCGTTACCCCGC 63882 Query 182 CAACTAGCTAAT 193 |||| |||| || Sbjct 63881 CAACAAGCTGAT 63870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071986492800