Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq771 329 1e-87 >seq771 Length=42375 Score = 329 bits (364), Expect = 1e-87 Identities = 443/607 (73%), Gaps = 25/607 (4%) Strand=Plus/Minus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCC--GGCATT 58 ||||| | |||||||| |||||| |||||| || |||| | | | || || ||| Sbjct 23619 TCGACCATGGAGCTTA-TCCCCCACAGTCTGACTGCCGGGTTATTGGGATCCAGGGAATT 23561 Query 59 CGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTACCTC 118 ||||||||| ||| ||| || | || ||||| ||||| ||||||||||||||||||| Sbjct 23560 CGGAGTTTGATTGGTTTTGGCATCCTGGTGGGGACCCTAAGCCATCCAGTGCTCTACCTC 23501 Query 119 CGGGAAGAAAC-ACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGA 177 | | || | || ||||||| ||| || ||||||| ||||||||||||||||| Sbjct 23500 CCTGGAGTACTTACCCGACGCTAGCCCTCAAGCTATTTCGGAGAGAACCAGCTATCACGG 23441 Query 178 AGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGG 237 |||||||| | ||||| | |||| ||||| ||||| | | |||||||| | | Sbjct 23440 GGTTTGATTAGTCTTTCGCTCCTACTCACAGTTCATCTCAGGATTTTTCAACATCCACGA 23381 Query 238 GTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCA-CTTCG 296 |||||||||||||| ||| |||||| ||||||||||| ||||| ||||||| || || Sbjct 23380 GTTCGGTCCTCCACTGGGTGTTACCCCAGCTTCAACCTGACCATGAGTAGATCACCTCCG 23321 Query 297 CTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTA- 355 |||||||||| | || || | ||| ||||||| ||||||||||||| ||| | Sbjct 23320 CTTCGGGTCTATTGCCGGCGACCTAGTCGCGCTATTCGCACTCGCTTTCGCT-GGGCCAC 23262 Query 356 --CCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGG 413 |||| | ||| || || | | || ||||||||| |||||| | ||||||| Sbjct 23261 CGCCCCTGAGGGGCTACGGCAGCCGC-CGACAATAACTCGCAGACTCATTATGCAAAAGG 23203 Query 414 CACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTT 473 || || ||||| ||| || ||||| || |||||||||||| |||| Sbjct 23202 CAGGCGGTCAC------CCT----TGC----GGGCTCCCACACATTGTAGGCACAGGGTT 23157 Query 474 TCAGGTACTATTTCACTCCCC-GCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGT 532 ||||| |||||||||||||| ||||||| ||||||||||||||||| ||||||| || Sbjct 23156 GCAGGTTCTATTTCACTCCCCTATCAGGGGTTCTTTTCACCTTTCCCTCGCGGTACTGGT 23097 Query 533 CCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGA 592 | ||||||||| | | |||||||| |||| | |||||| | | ||||| | || Sbjct 23096 TCACTATCGGTCGCTAGATGGTATTTAGCCTTATCCCGTGGTCGGGACGGATTCGCGCGG 23037 Query 593 AATTTCA 599 | ||||| Sbjct 23036 AGTTTCA 23030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817577098240