Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq771 199 1e-48 >seq771 Length=42375 Score = 199 bits (220), Expect = 1e-48 Identities = 246/326 (75%), Gaps = 14/326 (4%) Strand=Plus/Minus Query 46 GTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCC 105 ||||||||||||| | || ||||||| | ||| ||||||| |||| | |||||| || Sbjct 23380 GTTCGGTCCTCCACTGGGT-GTTACCCCAGCTT-CAACCTGACCATGAG-TAGATCACCT 23324 Query 106 GGTTTTCGGGTCTATTTCCCAGCGAC-TAGACGCCCTAGTAAGACTCGCTTTTCGCTACG 164 |||||||||||| || ||||| ||| ||| ||| | ||||||||| |||| | Sbjct 23323 CCGCTTCGGGTCTATTGCCG-GCGACCTAGTCGCGCTATTCGCACTCGCTTT-CGCTGGG 23266 Query 165 CCTCC---CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAA 221 || || ||| || || | ||| | || ||||| |||| ||| |||||| ||| Sbjct 23265 CCACCGCCCCTGAGGGGCTACGGCA-GCCGCCGACAATAACTCGCAGACTCATTATGCAA 23207 Query 222 AAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGA 281 |||| | || ||||||| | |||||||||| ||||| ||| | |||| |||| Sbjct 23206 AAGGCAGGCGGTCACCCTT----GCGGGCTCCCACACATTGTAGGCACAGGGTTGCAGGT 23151 Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTA 341 |||||||||||||||| || |||||||||||| |||||||||| ||||||| |||||||| Sbjct 23150 TCTATTTCACTCCCCTATCAGGGGTTCTTTTCACCTTTCCCTCGCGGTACTGGTTCACTA 23091 Query 342 TCGGTCAGTCAGTAGTATTTAGCCTT 367 |||||| | | |||||||||||| Sbjct 23090 TCGGTCGCTAGATGGTATTTAGCCTT 23065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241584355840