Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq952 96.9 2e-18 seq861 96.9 2e-18 >seq952 Length=22710 Score = 96.9 bits (106), Expect = 2e-18 Identities = 70/77 (91%), Gaps = 3/77 (4%) Strand=Plus/Minus Query 48 TCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGAC 107 ||||||| | ||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 2630 TCTCACTGAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGAC 2573 Query 108 GTAATACAACGCAAGCT 124 ||||| ||||||||||| Sbjct 2572 GTAAT-CAACGCAAGCT 2557 >seq861 Length=29000 Score = 96.9 bits (106), Expect = 2e-18 Identities = 70/77 (91%), Gaps = 3/77 (4%) Strand=Plus/Plus Query 48 TCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGAC 107 ||||||| | ||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 19831 TCTCACTGAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGAC 19888 Query 108 GTAATACAACGCAAGCT 124 ||||| ||||||||||| Sbjct 19889 GTAAT-CAACGCAAGCT 19904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300796446800