Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq771 158 2e-36 seq685 143 5e-32 >seq771 Length=42375 Score = 158 bits (174), Expect = 2e-36 Identities = 137/170 (81%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||||||| ||||||| || | ||||||||| || || | | ||||||||| ||||||| Sbjct 21138 GGCGTCGCTCCATCAGGCTTGCGCCCATTGTGAAAAATTCTCGACTGCTGCCACCCGTAG 21079 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 | |||||| |||||||||||| ||| |||||| | || |||||||| || |||||| | Sbjct 21078 GTGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACCCGT 21019 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGC 170 | | | ||||||||||| ||| | | ||||||| || || ||||||| || Sbjct 21018 CTTAGCCTTGGTGGGCTTTTACCCCGCCAACTAGCTGATAGGCCGCGGGC 20969 >seq685 Length=65961 Score = 143 bits (158), Expect = 5e-32 Identities = 216/304 (71%), Gaps = 6/304 (2%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||| || |||||||||| ||||||||||| | ||| | | ||||||||| ||||||| Sbjct 64028 GGCGTTGCACCATCAGGGTTGCCCCCATTGTGAATTATTCTCGACTGCTGCCACCCGTAG 63969 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 | |||||| |||||||||||| ||| |||| | | || |||||||| || | || | | Sbjct 63968 GTGTCTGGACCGTGTCTCAGTTCCAGTGTGCCTGATCGTCCTCTCAGACCAGGTATCCGT 63909 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||| | |||||||||| ||| | | ||||| | || || | ||||| || ||| || | Sbjct 63908 CGTAGCCTTGGTGGGCCGTTACCCCGCCAACAAGCTGATAGAACGCGAACCAATCCTTGA 63849 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 |||| | ||| | | | || | | || | ||| ||||||| Sbjct 63848 GCGA-CAGCCTTGCGGCCGCCTTTAAT--CTCGCGATGCC---ATGGGGTATTAATCCAA 63795 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 |||||| | |||||| | || || |||| || ||||||||||||||||||| ||| Sbjct 63794 GTTTCCCTGGGCTATTCCCCACTCAAGGGCATGTCATTCACGTGTTACTCACCCGTGCGC 63735 Query 301 CACT 304 |||| Sbjct 63734 CACT 63731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998387420160