Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq771 145 2e-32 >seq771 Length=42375 Score = 145 bits (160), Expect = 2e-32 Identities = 286/413 (69%), Gaps = 25/413 (6%) Strand=Plus/Minus Query 5 TACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTGG 64 |||||| ||||||| |||||| ||||||| |||| ||| ||| ||| || ||| || Sbjct 24021 TACGCCCTACGGCCTCACCTTAGCTCCCGACTGACCCTGGGAGGACGAACCTGCCCCAGG 23962 Query 65 AACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGCAT 123 || |||||| | ||||| ||| |||| || ||| | |||||||| || |||||| Sbjct 23961 AAACCTTGGGTTTACGGCGACCGGAATTCTCATCCGGTTTATCGCTACTCGTGTCTGCAT 23902 Query 124 TCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACG---AC 180 ||||||| || | |||||||| | || | ||||| || || ||| || Sbjct 23901 TCTCACTGGCCGCCCCTCCACCATTTCTT-ACGAAACGGCTTCGCCG--GA-ACGGCCAC 23846 Query 181 GCTCCCCTACCCAACCAC---------ACAGGTTG----CCACAGCTTCGGCGGATAACT 227 |||| |||||| || | || || | || |||||||||| | || Sbjct 23845 GCTCTCCTACCACTCCGCCCGGTCGTGACCGGACGGAATCCGCAGCTTCGGCATACCGCT 23786 Query 228 TAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTT 287 || | || | |||| |||||||| ||| || || ||| |||| ||||||||| ||| Sbjct 23785 TAT-CGCCAAT-CATTTTCGGCGCGTCATCGCTCGATGAGTCAGCTGTTACGCACTGTTT 23728 Query 288 CAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCC 347 || ||||||||| || |||||||| |||| ||||| || || |||||||||| || Sbjct 23727 AAATGATGGCTGCCTCTAAGCCAACATCCTCACTGTCTCAGCGACGACACATCCTTT-CC 23669 Query 348 ACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||| | | | ||||| ||||| |||| | ||||| ||||| ||||||| Sbjct 23668 ACTTA-ACGGTATTTAGGCGCCTTGGCTGGCGGTCTGGACTGTTATCCTCTCG 23617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177585162240