Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq771 96.9 3e-18 seq685 80.6 2e-13 >seq771 Length=42375 Score = 96.9 bits (106), Expect = 3e-18 Identities = 112/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| | |||||| | ||| | | ||| |||||| ||||| | | || | Sbjct 22068 CGAGTTGCAGCCGACAATCTGAACTGGGCC-CGGTTTTGGGGATTTGCTCCGCGTTGCCG 22010 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || |||| |||| ||||||| ||||||| |||||| || |||||||||| Sbjct 22009 CCTTGCTTCCCTTTGTACCGGGCATTGTAGTACGTGTGCAGCCCTGGCCGTAAGGGCCAT 21950 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCC 151 ||||||||||||||||||||||||||| Sbjct 21949 ACTGACTTGACGTCATCCCCACCTTCCTCC 21920 >seq685 Length=65961 Score = 80.6 bits (88), Expect = 2e-13 Identities = 111/152 (73%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | || ||| |||| |||| |||||||| Sbjct 64978 CGAGTTGCAGCCTCCAATCCGAACTGGGCC-CAGTTTTACAGATTTCCTCCACCTCGCGG 64920 Query 62 GTTGGCGGCCCTC--TGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 | ||| ||| |||| ||||||| ||||||| |||||| | |||||||| Sbjct 64919 CAT--CGGTTCTCATTGTACTGGGCATTGTAGTACGTGTGCAGCCCTGGGCGTAAGGGCC 64862 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCC 151 || ||| ||||||| ||||||||||||||| Sbjct 64861 ATACTGACCTGACGTCGTCCCCACCTTCCTCC 64830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415994922200