Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq685 206 4e-51 seq771 196 8e-48 >seq685 Length=65961 Score = 206 bits (228), Expect = 4e-51 Identities = 218/286 (76%), Gaps = 1/286 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 || |||| ||||||||||||| | ||||||| | ||| |||||||| ||||||||| Sbjct 64425 GCCTTCGAGCCTCAGCGTCAGGTGTTGTCCAGTAGCTCGCTTTCGCCACGAGTGTTCCTC 64366 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAA- 124 ||||| ||||||||||| ||||||| ||||||| | |||||||| | ||||| Sbjct 64365 TTGATATCCACGCATTTCACTGCTACACCAAGAATTCCAGCTACCTCTCCAACCCTCAAA 64306 Query 125 GAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184 | | |||| || | |||| ||||||||||| | |||||| |||||||| || Sbjct 64305 GCATGGCAGTATCGGACGCAGTTCCGGGGTTGAGCCCCGGGATTTCACGTCTGACTTACC 64246 Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244 |||||||| | |||||||| |||| | | |||| | |||||| | |||| |||||| Sbjct 64245 ACGCCGCCTACGCTCCCTTTACGCCCAGTGATTCCGAACAACGCTCGGGACCTTCGTATT 64186 Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||| |||||||||| ||| || || |||| Sbjct 64185 ACCGCGGCTGCTGGCACGAAGTTAGCCGTCCCTTCCTCTTCCGGTA 64140 >seq771 Length=42375 Score = 196 bits (216), Expect = 8e-48 Identities = 204/268 (76%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||||| ||||| | |||||| | |||||||||||| |||||||||| Sbjct 21506 GCTTTCGTGCCTCAGTGTCAGGAATGGTCCAGAGACTCGCCTTCGCCACCGGTGTTCCTC 21447 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 ||||||||||||||||| ||||||| ||||||| | || |||| ||| || Sbjct 21446 TCGATATCTACGCATTTCACTGCTACACCGAGAATTCCAGTCTCCCCTCCCATCCTCTAG 21387 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 | ||||||| | ||| || ||||||||||| || ||||||| | ||||| Sbjct 21386 CGAGCCAGTTTCGAGCGCACCCTCCGGGTTGAGCCCGGAGATTTCACACCCGACTTAGTC 21327 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || ||||| | |||||||| |||| | |||||| | |||||||| |||| |||||| Sbjct 21326 CGCCACCTACGCACCCTTTACGCCCAGTGAATCCGAACAACGCTTGGGACCTCTGTATTA 21267 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGT 273 |||||||||||||||| |||||||||| Sbjct 21266 CCGCGGCTGCTGGCACAGAGTTAGCCGT 21239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828789883460