Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq952 105 7e-21 seq109 82.4 8e-14 >seq952 Length=22710 Score = 105 bits (116), Expect = 7e-21 Identities = 137/182 (75%), Gaps = 7/182 (4%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTG-CTC-GAATACATTA 65 || ||||| ||||||||||||||| ||||||||||| || |||| || ||||| Sbjct 1688 ACGTTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGACCTGTTTGAGTCTGAATATTCGT 1747 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG-T 124 ||||||||||| |||| || | |||||||||||||| ||||| | ||| | | | | Sbjct 1748 GCATGGAATAATGAAATATGA-ATTCGGTTCTATTTTGTTGGTTT-TCGGAACTCGAGTT 1805 Query 125 AATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGG 184 |||||| || | ||| || |||||| | ||| || || | ||||||||||||||| Sbjct 1806 AATGATCAAGAGGGACAGACGGGGGCATTCGTACTCTGCCGTTAGAGGTGAAATTCTTGG 1865 Query 185 AT 186 || Sbjct 1866 AT 1867 >seq109 Length=5859 Score = 82.4 bits (90), Expect = 8e-14 Identities = 121/164 (74%), Gaps = 7/164 (4%) Strand=Plus/Minus Query 28 TTAGAGCGTTCAAAGCAGGCCT--TTGC-TC-GAATACATTACCATGGAATAATAGAATA 83 |||||| ||||||||||| ||| ||| || ||||| ||||||||||| |||| Sbjct 2960 TTAGAGTGTTCAAAGCAGACCTGTTTGAGTCTGAATATTCGTGCATGGAATAATGAAATA 2901 Query 84 GGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGT-AATGATAAATACGGATAG 142 || | |||||||||||||| ||||| | ||| | | || |||||| || | ||| || Sbjct 2900 TGAATT-CGGTTCTATTTTGTTGGTTT-TCGGAACTCGAGTTAATGATCAAGAGGGACAG 2843 Query 143 TCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 |||||| | ||| || || | ||||||||||||||||| Sbjct 2842 ACGGGGGCATTCGTACTCTGCCGTTAGAGGTGAAATTCTTGGAT 2799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511993750400