Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq771 224 2e-56 seq685 210 5e-52 >seq771 Length=42375 Score = 224 bits (248), Expect = 2e-56 Identities = 305/418 (73%), Gaps = 13/418 (3%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||| | |||||| ||||| || |||||||| | ||| ||||||||||||||||||| Sbjct 21169 TTTACGAGCCGAAGCCCTTCATCCCCCACGCGGCGTCGCTCCATCAGGCTTGCGCCCATT 21110 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||| || |||| | ||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 21109 GTGAAAAATTCTCGACTGCTGCCACCCGTAGGTGTCTGGACCGTGTCTCAGTTCCAGTGT 21050 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 |||||||| ||||||||||||||||| || | |||| ||||||| ||||||||||| Sbjct 21049 GGCTGGTCGTCCTCTCAGACCAGCTACCCGTCTTAGCCTTGGTGGGCTTTTACCCCGCCA 20990 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||| || ||| | ||| | |||| ||||| ||||||| |||| Sbjct 20989 ACTAGCTGATAGGCCGCGGGCTTATCGTAAAGTGCCAGGCCTTGCGGTCCCCGGCTTTAC 20930 Query 245 T-CTTGC-GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCC--CTCCATCA 300 | ||||| || || ||||||||| |||| | ||| | ||| || || | Sbjct 20929 TCCTTGCGGAGCACATTGGGTATTAGCTCGTCTTTCAACGAGTTGTTCCCAGCTTCA-CG 20871 Query 301 GGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCT- 359 | | | |||| |||| ||||| | |||||||| || | | | |||| Sbjct 20870 GCAAATGACCCACGTGTTACGCACCCTTGCGCCACTC----CCGCTCCGGAATATTGCTA 20815 Query 360 TCCTGTTAC---CGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || | || |||||||||||||||| ||| | ||||||||||||| |||||| Sbjct 20814 CCCCGGAACGAGCGTTCGACTTGCATGTCTTATCCACGCCGCCAGCGTTCGTTCTGAG 20757 >seq685 Length=65961 Score = 210 bits (232), Expect = 5e-52 Identities = 300/415 (72%), Gaps = 13/415 (3%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||| |||||| || || || | |||||||| | || ||||||| |||| |||||| Sbjct 64059 TTTACAATCCGAAGACCGTCATCCTCCACGCGGCGTTGCACCATCAGGGTTGCCCCCATT 64000 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||| | ||||| | ||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 63999 GTGAATTATTCTCGACTGCTGCCACCCGTAGGTGTCTGGACCGTGTCTCAGTTCCAGTGT 63940 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 | ||| || |||||||||||||| || |||| |||| |||||||| ||||||||||| Sbjct 63939 GCCTGATCGTCCTCTCAGACCAGGTATCCGTCGTAGCCTTGGTGGGCCGTTACCCCGCCA 63880 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 || |||| || | | |||| || || || | | | || |||| Sbjct 63879 ACAAGCTGATAGAACGCGAACCAATCCTTGAGCGACAGCCTTGCGG----CCGCCTTTAA 63824 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCA--GG 302 ||| |||| | ||| ||||||| | |||||| || ||| |||| | ||| || Sbjct 63823 TCTCGCGATGCCATGGGGTATTAATCCAAGTTTCCCTGGGCTATTCCCCAC--TCAAGGG 63766 Query 303 CA-GTTTCCCAGACATTACTCACCCGTCCGCCACT-CGTCAGCGAAGCAGCAAGCTGC-T 359 || || || |||||||||||| ||||||| | || | ||| | ||| | | Sbjct 63765 CATGTCATTCACGTGTTACTCACCCGTGCGCCACTGTGCCATCCAAGTA--TTGCTACAT 63708 Query 360 TCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || ||||| |||||||||||| ||| | ||||||||||||| |||||| Sbjct 63707 AAATGACACCGTGCGACTTGCATGTCTTAAACACGCCGCCAGCGTTCGTTCTGAG 63653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222384597760