Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq771 233 6e-59 seq685 172 2e-40 >seq771 Length=42375 Score = 233 bits (258), Expect = 6e-59 Identities = 268/362 (74%), Gaps = 25/362 (7%) Strand=Plus/Plus Query 152 GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAG 211 |||| |||||| | || |||||||||| ||||| || |||||||| | || | Sbjct 20964 GATAAGCCCGCGGCCTATCAGCTAGTTGGCGGGGTAAAAGCCCACCAAGGCTAAGACGGG 21023 Query 212 TAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACG 271 |||| | |||||||| || | |||||| |||||||||||||||||||| || |||||| Sbjct 21024 TAGCTGGTCTGAGAGGACGACCAGCCACACTGGAACTGAGACACGGTCCAGACACCTACG 21083 Query 272 GGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 || ||||||||| | |||| || |||||||||| |||||||||| ||| |||||||||| Sbjct 21084 GGTGGCAGCAGTCGAGAATTTTTCACAATGGGCGCAAGCCTGATGGAGCGACGCCGCGTG 21143 Query 332 AGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCT-------CAAGG----------AA 374 | |||||||| |||||| ||||||| | ||||| | ||| | || Sbjct 21144 GGGGATGAAGGGCTTCGGCTCGTAAACCCCTGTCATTCGCGAACAAAGGTGCCGGCCTAA 21203 Query 375 GAT-------AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCG 427 || ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 21204 CATGCCGTCGCCTGATAGTAGCGGAAGAGGAAGGGACGGCTAACTCTGTGCCAGCAGCCG 21263 Query 428 CGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGT 487 ||||||||| ||| | |||||| | |||| | ||| ||||||||||||||||||||| Sbjct 21264 CGGTAATACAGAGGTCCCAAGCGTTGTTCGGATTCACT-GGGCGTAAAGGGTGCGTAGGT 21322 Query 488 GG 489 || Sbjct 21323 GG 21324 >seq685 Length=65961 Score = 172 bits (190), Expect = 2e-40 Identities = 267/393 (68%), Gaps = 53/393 (13%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||||| || |||| ||||| ||||||||| |||||||| |||| || | | Sbjct 63862 CGCGTTCTATCAGCTTGTTGGCGGGGTAACGGCCCACCAAGGCTACGACGGATACCTGGT 63921 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||||| |||| | |||| |||||||||||||||||||| || |||||||| ||||| Sbjct 63922 CTGAGAGGACGATCAGGCACACTGGAACTGAGACACGGTCCAGACACCTACGGGTGGCAG 63981 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 |||| | ||||| | ||||||||| || ||||||| ||||||||||||| ||||| Sbjct 63982 CAGTCGAGAATAATTCACAATGGGGGCAACCCTGATGGTGCAACGCCGCGTGGAGGATGA 64041 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCA------------------------------ 369 || |||||| | ||||| ||||| || Sbjct 64042 CGGTCTTCGGATTGTAAACTCCTGTCATCNNNNNNNNNTGTTAAACTCCTGTCATCCGGG 64101 Query 370 AGGAAGA---------TAA-------------TGACGGTACTTGAGGAGGAAGCCCCGGC 407 || |||| ||| ||| |||| || ||||||| |||| Sbjct 64102 AGTAAGACCTGGGAGTTAATAGCTCACAGGGTTGATAGTACCGGAAGAGGAAGGGACGGC 64161 Query 408 TAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGG 467 ||||| |||||||||||||||||||||||| ||| | |||||| | |||||| ||| | Sbjct 64162 TAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGTCCCGAGCGTTGTTCGGAATCACT-G 64220 Query 468 GGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||||||||| ||||||| || | |||||| Sbjct 64221 GGCGTAAAGGGAGCGTAGGCGGCGTGGTAAGTC 64253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497581130240