Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq685 286 8e-75 seq771 280 4e-73 >seq685 Length=65961 Score = 286 bits (316), Expect = 8e-75 Identities = 309/406 (76%), Gaps = 5/406 (1%) Strand=Plus/Plus Query 6 GAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCG 65 || ||||||| ||||||||| |||||||||||||||||||||||| ||| | |||| Sbjct 64145 GAAGAGGAAGGGACGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGTCCCGAGCG 64204 Query 66 TTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAG 125 || | |||||| ||||||||||||||| ||||||| || | ||||||||| |||||| Sbjct 64205 TTGTTCGGAATCACTGGGCGTAAAGGGAGCGTAGGCGGCGTGGTAAGTCAGACGTGAAAT 64264 Query 126 GCTATGGCTCAACCCCGGGACTGCTTTTGAAACTG-CAGGGCTAGAGTGCAGGAGGGGCA 184 | ||||||||||||| ||||| | || |||| || | | ||| | |||| || | Sbjct 64265 CCCGGGGCTCAACCCCGGAACTGCGTCCGATACTGCCATGCTTTGAGGGTTGGAGAGGTA 64324 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||||| | ||||||| ||||||||||| ||||| | ||||||||| |||||||| Sbjct 64325 GCTGGAATTCTTGGTGTAGCAGTGAAATGCGTGGATATCAAGAGGAACACTCGTGGCGAA 64384 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 ||| | |||||| | ||||| |||||||||||| || ||||||| || ||||| Sbjct 64385 AGCGAGCTACTGGACAACACCTGACGCTGAGGCTCGAAGGCCAGGGGAGCGAAAGGGATT 64444 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGC 364 |||||||| ||||||| || ||||||| || | || ||||| | | | || | | Sbjct 64445 AGATACCCCTGTAGTCCTGGCAGTAAACGGTGCACGCTTGGTGT--GAGGGGATTCGACC 64502 Query 365 TCC--GGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || |||||| ||||||||| |||| | || |||||| |||| Sbjct 64503 CCCCTCGTGCCGGAGCAAACGCGTTAAGCGTGCCGCCTGGGAAGTA 64548 >seq771 Length=42375 Score = 280 bits (310), Expect = 4e-73 Identities = 306/404 (76%), Gaps = 2/404 (0%) Strand=Plus/Plus Query 6 GAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCG 65 || ||||||| ||||||||| |||||||||||||||||||||| ||| | |||| Sbjct 21227 GAAGAGGAAGGGACGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGTCCCAAGCG 21286 Query 66 TTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAG 125 || | |||| | |||||||||||||||||||||||||| |||||| | |||||| Sbjct 21287 TTGTTCGGATTCACTGGGCGTAAAGGGTGCGTAGGTGGCGGACTAAGTCGGGTGTGAAAT 21346 Query 126 GCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAA 185 |||||||||| | | ||| | ||||||| ||||||| ||||||| | Sbjct 21347 CTCCGGGCTCAACCCGGAGGGTGCGCTCGAAACTGGCTCGCTAGAGGATGGGAGGGGAGA 21406 Query 186 GTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAG 245 |||||||| ||||||| ||||||||||||||||| |||||||||| ||||||||| Sbjct 21407 CTGGAATTCTCGGTGTAGCAGTGAAATGCGTAGATATCGAGAGGAACACCGGTGGCGAAG 21466 Query 246 GCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTA 305 ||| | |||||| | ||||||||||||| ||||||| |||||||||||||||||| Sbjct 21467 GCGAGTCTCTGGACCATTCCTGACACTGAGGCACGAAAGCCGGGGGAGCAAACAGGATTA 21526 Query 306 GATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTGC 364 |||||||||||||||| ||| |||||| || | | | ||| ||| | || | | Sbjct 21527 GATACCCTGGTAGTCCCGGCCCTAAACGGTGCGCATTTGCTGT-GGGCGGAATCGACCCC 21585 Query 365 TCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || ||| || ||| ||||| ||| | || ||||||||||| Sbjct 21586 GCCCGTGGCGGAGCTAACGCGTTAAATGCGCCGCCTGGGGAGTA 21629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203184839680