Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02]
1,260 sequences; 70,471,451 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq952 196 9e-48
seq861 196 9e-48
>seq952
Length=22710
Score = 196 bits (216), Expect = 9e-48
Identities = 182/226 (81%), Gaps = 5/226 (2%)
Strand=Plus/Plus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2365 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTAC 2423
Query 166 ACTGACAGAGCCAACGAG--TTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAA 223
| ||| ||||| | | || || ||||| |||||| ||||||| ||| ||
Sbjct 2424 AATGAGTCGATCAACGTGCGTATATTTCCAAGGCCGAAAGGTCGAGGTAATCC-GTTGAA 2482
Query 224 CTCTG-TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGT 282
| | ||||||| ||||||| | ||| |||| || | ||| |||||||||| || |||
Sbjct 2483 CCCGACTCGTGCTAGGGATAGGGACTTGTAATTGTTTCCCTTGAACGAGGAATTCCCAGT 2542
Query 283 AAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
|||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 2543 AAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTGCCCTTTGTA 2588
>seq861
Length=29000
Score = 196 bits (216), Expect = 9e-48
Identities = 182/226 (81%), Gaps = 5/226 (2%)
Strand=Plus/Minus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 20096 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTAC 20038
Query 166 ACTGACAGAGCCAACGAG--TTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAA 223
| ||| ||||| | | || || ||||| |||||| ||||||| ||| ||
Sbjct 20037 AATGAGTCGATCAACGTGCGTATATTTCCAAGGCCGAAAGGTCGAGGTAATCC-GTTGAA 19979
Query 224 CTCTG-TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGT 282
| | ||||||| ||||||| | ||| |||| || | ||| |||||||||| || |||
Sbjct 19978 CCCGACTCGTGCTAGGGATAGGGACTTGTAATTGTTTCCCTTGAACGAGGAATTCCCAGT 19919
Query 283 AAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
|||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 19918 AAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTGCCCTTTGTA 19873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947188065280
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |