Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq771 226 1e-56 >seq771 Length=42375 Score = 226 bits (250), Expect = 1e-56 Identities = 354/490 (72%), Gaps = 21/490 (4%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACA--GTCGCTGGGTGTAGACCCGAAACCAAG-TGATCTACCC 58 ||||| |||| || ||||| ||||| || |||||||||| | || |||||||| | Sbjct 23277 CGAGTGCGAATAGCGCGACTAGGTCGCCGGCAATAGACCCGAAGCGGAGGTGATCTACTC 23336 Query 59 ATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118 |||| |||| ||||| || |||||||| | |||||| |||||| | |||||||||| Sbjct 23337 ATGGTCAGGTTGAAGCTGGGGTAACACCCAGTGGAGGACCGAACTCGTGGATGTTGAAAA 23396 Query 119 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 178 || | ||||| ||||| ||||| | ||||| |||| ||||| | ||||||||||| Sbjct 23397 ATCCTGAGATGAACTGTGAGTAGGAGCGAAAGACTAATCAAACCCCGTGATAGCTGGTTC 23456 Query 179 TCTCCGAAAACTATTTAGG--TAGTGCC--TCAAGTATCACCATCGGGGGTAGAGCACTG 234 ||||||||| || ||| ||| | | ||||| | ||| || |||||||||||| Sbjct 23457 TCTCCGAAATAGCTTGAGGGCTAGCGTCGGGTAAGTA-CTCCA-GGGAGGTAGAGCACTG 23514 Query 235 TTATGGC-TAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC---GCAT 290 ||||| ||||| | | | | |||||| | |||||||||||| | | || Sbjct 23515 -GATGGCTTAGGGTCCCCACCAGGATGCCAAAACCAAT-CAAACTCCGAATTCCCTGGAT 23572 Query 291 CAGTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAAT 350 | | ||| ||| ||| || |||| | |||| ||| || |||||||| || | | Sbjct 23573 CCCAATAACC-CGGCAGTCAGACTGTGGGGGATAAGCTCCATGGTCGAGAGGATAACAGT 23631 Query 351 CCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGC 410 || ||| |||| ||||| || |||| || | ||||| | || || || | | || Sbjct 23632 CCAGACCGCCAGCCAAGGCGCCTAAAT-ACCGTTAAGTGGA---AAGGATGTGTCGTCGC 23687 Query 411 TAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTC 470 | |||||| ||||||||||||| || ||||||| ||||||||| |||||||||||||| Sbjct 23688 TGAGACAGTGAGGATGTTGGCTTAGAGGCAGCCA-TCATTTAAACAGTGCGTAACAGCTG 23746 Query 471 ACTAGTCGAG 480 ||| ||||| Sbjct 23747 ACTCATCGAG 23756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689578711040