Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq861 600 4e-169 seq332 452 1e-124 seq109 129 2e-27 >seq861 Length=29000 Score = 600 bits (664), Expect = 4e-169 Identities = 461/541 (85%), Gaps = 18/541 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| | | |||| ||||||||||||||||||| | Sbjct 1886 CTTTTGCTCTACGTGAGGTTTCTGTCCCCACTGAGCTTGCCTTAGGACACCTGCGTTACG 1945 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCG-GAT 125 ||| |||||||| ||||||||| |||||||||| |||||| |||| |||| || | | Sbjct 1946 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACGCTGTCTTCAATGCGTGGT 2005 Query 126 CGG---CCCGCGAAGGA----CCTTAACGCCAGAAAATGGTCGGTGA--AGACCAG---- 172 | | | | | | | |||||| | | ||| || || | ||| | | Sbjct 2006 CAGAAGCACACAAGTGCGCTTCCTTAAAACTACAAA-TGAGCGACTACAAGAGCCGCGCT 2064 Query 173 TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAA 232 | |||||||| ||| ||||||||||||||||||| |||||||||||||| | ||||| | Sbjct 2065 TCCCGCTTCACTGAATAAGTAAAAAAACGATAAGAGTAGTGGTATTTCATTGTCGCCGGA 2124 Query 233 ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 |||||||| |||||||||||||||| ||| ||||||||||| ||||||||||||| Sbjct 2125 ---GCTCCCACCTATTCTACACCTCTCATGTCTCTTCACAAAGTCAAACTAGAGTCAAGC 2181 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2182 TCAACAGGGTCTTCTTTCCCCGCTGATTTTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 2241 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2242 CTAGATGGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 2301 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2302 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 2361 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2362 TTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAAC 2421 Query 533 A 533 | Sbjct 2422 A 2422 Score = 600 bits (664), Expect = 4e-169 Identities = 461/541 (85%), Gaps = 18/541 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| | | |||| ||||||||||||||||||| | Sbjct 22634 CTTTTGCTCTACGTGAGGTTTCTGTCCCCACTGAGCTTGCCTTAGGACACCTGCGTTACG 22693 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCG-GAT 125 ||| |||||||| ||||||||| |||||||||| |||||| |||| |||| || | | Sbjct 22694 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACGCTGTCTTCAATGCGTGGT 22753 Query 126 CGG---CCCGCGAAGGA----CCTTAACGCCAGAAAATGGTCGGTGA--AGACCAG---- 172 | | | | | | | |||||| | | ||| || || | ||| | | Sbjct 22754 CAGAAGCACACAAGTGCGCTTCCTTAAAACTACAAA-TGAGCGACTACAAGAGCCGCGCT 22812 Query 173 TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAA 232 | |||||||| ||| ||||||||||||||||||| |||||||||||||| | ||||| | Sbjct 22813 TCCCGCTTCACTGAATAAGTAAAAAAACGATAAGAGTAGTGGTATTTCATTGTCGCCGGA 22872 Query 233 ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 |||||||| |||||||||||||||| ||| ||||||||||| ||||||||||||| Sbjct 22873 ---GCTCCCACCTATTCTACACCTCTCATGTCTCTTCACAAAGTCAAACTAGAGTCAAGC 22929 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 22930 TCAACAGGGTCTTCTTTCCCCGCTGATTTTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 22989 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 22990 CTAGATGGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 23049 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 23050 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 23109 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 23110 TTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAAC 23169 Query 533 A 533 | Sbjct 23170 A 23170 >seq332 Length=2908 Score = 452 bits (500), Expect = 1e-124 Identities = 387/471 (82%), Gaps = 19/471 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| | | |||| ||||||||||||||||||| | Sbjct 53 CTTTTGCTCTACGTGAGGTTTCTGTCCCCACTGAGCTTGCCTTAGGACACCTGCGTTACG 112 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCG-GAT 125 ||| |||||||| ||||||||| |||||||||| |||||| |||| |||| || | | Sbjct 113 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACGCTGTCTTCAATGCGTGGT 172 Query 126 CGG---CCCGCGAAGGA----CCTTAACGCCAGAAAATGGTCGGTGA--AGACCAG---- 172 | | | | | | | |||||| | | ||| || || | ||| | | Sbjct 173 CAGAAGCACACAAGTGCGCTTCCTTAAAACTACAAA-TGAGCGACTACAAGAGCCGCGCT 231 Query 173 TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAA 232 | |||||||| ||| ||||||||||||||||||| |||||||||||||| | ||||| | Sbjct 232 TCCCGCTTCACTGAATAAGTAAAAAAACGATAAGAGTAGTGGTATTTCATTGTCGCCGGA 291 Query 233 ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 |||||||| |||||||||||||||| ||| ||||||||||| ||||||||||||| Sbjct 292 ---GCTCCCACCTATTCTACACCTCTCATGTCTCTTCACAAAGTCAAACTAGAGTCAAGC 348 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 349 TCAACAGGGTCTTCTTTCCCCGCTGATTTTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 408 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 409 CTAGATGGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 468 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT-AGTTACTCCCGCCGT 462 ||||||||||||||||||||| |||||| ||||| |||| | ||||||| Sbjct 469 GATGACGAGGCATTTGGCTACACTAAGAGCGTCATCAGTTGCGACCGCCGT 519 Score = 129 bits (142), Expect = 2e-27 Identities = 76/79 (96%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1110 CCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 1169 Query 515 AAATCACATTGCGTCAACA 533 |||||||||||||| |||| Sbjct 1170 AAATCACATTGCGTTAACA 1188 >seq109 Length=5859 Score = 129 bits (142), Expect = 2e-27 Identities = 76/79 (96%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 5549 CCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 5608 Query 515 AAATCACATTGCGTCAACA 533 |||||||||||||| |||| Sbjct 5609 AAATCACATTGCGTTAACA 5627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635179396480