Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq771 206 9e-51 >seq771 Length=42375 Score = 206 bits (228), Expect = 9e-51 Identities = 342/484 (71%), Gaps = 15/484 (3%) Strand=Plus/Minus Query 3 GACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAA 62 ||||||| ||||| |||| || | ||| | | ||| ||| | | | ||||||| Sbjct 24926 GACTTGTTGGTCTCACAGTTAACCCGGCTTCTAGCCATACCCTCGTCGCACGGTTGCCAA 24867 Query 63 CCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTT 122 || |||||| | ||| | || |||||||||| ||||||||| | ||||||||| Sbjct 24866 CCGTGCTGAGCCGAGCTTCGCGCTCCTCCGTTACCATTTGGGAGGA-AGCCGCCCCAGCC 24808 Query 123 AAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACT- 181 ||||| || || ||||||||||| || ||| | || | ||||||| || | | Sbjct 24807 AAACTGACCGGCAAGCACTGTCCCCCGCCTGGATGACAGGTCGGGGTTAGAATTCTAATT 24748 Query 182 -ACGGTCAGAGTGGTATTTCA-ACAACGACTCCAC--AACCACTAGCGTGGCCGCATCAT 237 ||| |||||||| ||||| | ||||||| | || | ||| || || ||| Sbjct 24747 AACGA--AGAGTGGTGTTTCACATTGCGACTCCCCGCAAACCGAAGCCTG--CGGTTCAA 24692 Query 238 AGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT 297 ||||||||||||| |||| || | | || ||||| ||| || ||||||||| Sbjct 24691 AGTCTCCCACCTACGCTACGCATCATTAATCAAAACCCAATGCCAGCTTACAGTGAAGGT 24632 Query 298 CCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCA 356 | |||||||| |||||| | ||| | | ||||||| || | | || |||| Sbjct 24631 GCATAGGGTCTTTCCGTCCTACTGCGGGCATGCGGCATCTTCACCGCAATTACAGTTTCG 24572 Query 357 CCGGG--CCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACT 414 ||| | ||| | ||||||| | ||||||||| | ||||||||||||||||||| Sbjct 24571 CCGAGATCCTCTCC--GAGACAGTCGTTCAGTCGTTACACGATTCGTGCAGGTCGGAACT 24514 Query 415 TACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGG 474 |||||||||||||||||||||||||||||| ||||||||||| ||| | || || ||| Sbjct 24513 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGACATTCACGGGG 24454 Query 475 GCTT 478 ||| Sbjct 24453 ACTT 24450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702378549760