Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq685 150 4e-34 seq771 134 3e-29 >seq685 Length=65961 Score = 150 bits (166), Expect = 4e-34 Identities = 156/203 (77%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 84 AGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCG 143 || ||||||||||||| ||| || ||||||| ||||| | | || |||| | | Sbjct 64064 AGGAGTTTACAATCCGAAGA-CCGTCATCCTCCACGCGGCGTTGCACCATCAGGGTTGCC 64006 Query 144 TCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTC 203 |||||| | ||||| ||||||||| |||||||| || |||||||||||||||||| Sbjct 64005 CCCATTGTGAATTATTCTCGACTGCTGCCACCCGTAGGTGTCTGGACCGTGTCTCAGTTC 63946 Query 204 CAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACC 263 || |||| || | |||||||||| | ||||| |||||| || |||||||||||||| Sbjct 63945 CAGTGTGCCTGATCGTCCTCTCAGACCAGGTATCCGTCGTAGCCTTGGTGGGCCGTTACC 63886 Query 264 CCGCCTACTACCTAATGGAACGC 286 ||||| || | || || |||||| Sbjct 63885 CCGCCAACAAGCTGATAGAACGC 63863 >seq771 Length=42375 Score = 134 bits (148), Expect = 3e-29 Identities = 202/284 (71%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||| ||| || | | ||| || || | || || Sbjct 21262 GGCTGCTGGCACAGAGTTAGCCGTCCCTTCCTCTTCCGCTACTATCAGGCGACGGCATGT 21203 Query 61 --GGAAGGT---TTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTT 115 || || ||| ||| | || | || |||||| | ||| || ||||||||| Sbjct 21202 TAGGCCGGCACCTTTGTTCGCGAATGACAGGGGTTTACGAGCCGAAGC-CCTTCATCCCC 21144 Query 116 CACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCC 175 ||||| | | ||| |||| || || |||||| || |||| ||||||||| || Sbjct 21143 CACGCGGCGTCGCTCCATCAGGCTTGCGCCCATTGTGAAAAATTCTCGACTGCTGCCACC 21084 Query 176 CGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTA 235 |||||| || |||||||||||||||||||| ||||| | | |||||||||| | ||| Sbjct 21083 CGTAGGTGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTA 21024 Query 236 TCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 || || ||| || ||||||| |||||||||| |||| || || Sbjct 21023 CCCGTCTTAGCCTTGGTGGGCTTTTACCCCGCCAACTAGCTGAT 20980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068786533120