Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq861 109 9e-22 seq669 104 4e-20 >seq861 Length=29000 Score = 109 bits (120), Expect = 9e-22 Identities = 94/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| | ||||| | |||| || ||| || | | Sbjct 1561 GTACGAGAGGAACCGCAGA-TTCAGAC-ATTTGGTATATGCGACTCGTTGATAAGCGAAT 1504 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1503 GTTGCGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 1450 Score = 109 bits (120), Expect = 9e-22 Identities = 94/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| | ||||| | |||| || ||| || | | Sbjct 22310 GTACGAGAGGAACCGCAGA-TTCAGAC-ATTTGGTATATGCGACTCGTTGATAAGCGAAT 22253 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 22252 GTTGCGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 22199 >seq669 Length=74995 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| | ||||| | |||| || ||| || | | Sbjct 73390 GTACGAGAGGAACCGCAGA-TTCAGAC-ATTTGGTATATGCGACTCGTTGATAAGCGAAT 73447 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 73448 GTTGCGAAGCTACCATCTTTGGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 73501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819190000640