Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq669 462 7e-128 seq952 459 8e-127 seq109 145 2e-32 >seq669 Length=74995 Score = 462 bits (512), Expect = 7e-128 Identities = 417/512 (81%), Gaps = 14/512 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAA--AAGAGCCCTGTATCAGTATTTATTGTCACTAC 58 ||||||||||||| | |||| || ||||| | || || ||||| | |||||||| Sbjct 74775 GTACTCATTCCAACTTCAAGGCCTCGTTAAGAGTCTTGAATTGTTATTTTTCGTCACTAC 74716 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 ||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 74715 CTCCCCGAGTCGGGAATGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCG 74656 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 |||||||| |||||||||||||| | ||||||||||| |||||||||||| ||||||| Sbjct 74655 TTTCTCAGACTCCCTCTCCGGAACCAAACCCTAATTCTCCGTTACCCGTTACAACCATGG 74596 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 ||| ||| || |||||||||| |||||||||| |||| | |||||||| |||||||||| Sbjct 74595 TAGCCCAATACGCTACCATCGACAGTTGATAGGTCAGACACTTGAATGATCCATCGCCGG 74536 Query 239 CTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCAC--CAAGGAGC-CCCGAAGGGCG 295 || || ||||||||| | || |||| || |||| ||| || | |||||||| Sbjct 74535 TTCGAGACCATGCGATCAGCTAGTTTATCCAGACTCACCACAATGAACACCCGAAGGTGA 74476 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354 |||| |||| ||| ||||| | | || || || || | ||||| |||||||| Sbjct 74475 TTGG-TTTTGGTCTGATAAAAGCGCGCCGCCCAGAGAGCGACACTCTTAGCGTGTATTAG 74417 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGT-ACTATCAAATAAACGATAACTGAT 413 |||| ||||||| || |||||||||||| | | || ||||||| ||| | ||||||| Sbjct 74416 CTCTTGAATTACAACAGTTATCCATGTA--ACTTTCACGATCAAATGAACCAAAACTGAT 74359 Query 414 TTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATGGCTT 472 |||||||||||||||||||||||| ||| |||| || |||||||||||||||||||| Sbjct 74358 TTAATGAGCCATTCGCAGTTTCACCGTACTAGA--GC-CGTACTTAGACATGCATGGCTT 74302 Query 473 AATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||| Sbjct 74301 AATCTTTGAGACAAGCATATGACTACTGGCAG 74270 >seq952 Length=22710 Score = 459 bits (508), Expect = 8e-127 Identities = 416/512 (81%), Gaps = 14/512 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAA--AAGAGCCCTGTATCAGTATTTATTGTCACTAC 58 ||||||||||||| | |||| || ||||| | || || ||||| | |||||||| Sbjct 1463 GTACTCATTCCAACTTCAAGGCCTCGTTAAGAGTCTTGAATTGTTATTTTTCGTCACTAC 1404 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 ||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1403 CTCCCCGAGTCGGGAATGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCG 1344 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 |||||||| |||||||||||||| | ||||||||||| |||||||||||| ||||||| Sbjct 1343 TTTCTCAGACTCCCTCTCCGGAACCAAACCCTAATTCTCCGTTACCCGTTACAACCATGG 1284 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 ||| ||| || |||||||||| |||||||||| |||| | |||||||| |||||||||| Sbjct 1283 TAGCCCAATACGCTACCATCGACAGTTGATAGGTCAGACACTTGAATGATCCATCGCCGG 1224 Query 239 CTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCAC--CAAGGAGC-CCCGAAGGGCG 295 || || ||||||||| | || |||| || |||| ||| || | |||||||| Sbjct 1223 TTCGAGACCATGCGATCAGCTAGTTTATCCAGACTCACCACAATGAACACCCGAAGGTGA 1164 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354 |||| |||| ||| ||||| | | || || || || | ||||| |||||||| Sbjct 1163 TTGG-TTTTGGTCTGATAAAAGCGCGCCGCCCAGAGAGCGACACTCTTAGCGTGTATTAG 1105 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGT-ACTATCAAATAAACGATAACTGAT 413 |||| ||||||| || ||||||| |||| | | || ||||||| ||| | ||||||| Sbjct 1104 CTCTTGAATTACAACAGTTATCCCTGTA--ACTTTCACGATCAAATGAACCAAAACTGAT 1047 Query 414 TTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATGGCTT 472 |||||||||||||||||||||||| ||| |||| || |||||||||||||||||||| Sbjct 1046 TTAATGAGCCATTCGCAGTTTCACCGTACTAGA--GC-CGTACTTAGACATGCATGGCTT 990 Query 473 AATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||| Sbjct 989 AATCTTTGAGACAAGCATATGACTACTGGCAG 958 >seq109 Length=5859 Score = 145 bits (160), Expect = 2e-32 Identities = 104/116 (90%), Gaps = 4/116 (3%) Strand=Plus/Plus Query 390 ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTG 448 || ||||||| ||| | |||||||| |||||||||||||||||||||| ||| |||| | Sbjct 3435 ACGATCAAATGAACCAAAACTGATTAAATGAGCCATTCGCAGTTTCACCGTACTAGA--G 3492 Query 449 CTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3493 CCG-TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 3547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510380968960