Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq3087612 145 1e-32 seq957489 132 9e-29 SEQ43459 116 7e-24 seq793819 114 2e-23 seq1060892 104 4e-20 >seq3087612 Length=150 Score = 145 bits (160), Expect = 1e-32 Identities = 125/152 (82%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 17 GTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGGTGACG 76 |||||||||| |||||| ||| ||||||||||||||||||||| | | | | ||||||| Sbjct 150 GTGAAATAGAACCTGAAACCGTACGCCTACAAGCGGTCGGAGCCCATTAACTGGGTGACG 91 Query 77 GCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGGCTTCA 136 |||||||||||||||||||||||||||||||| | || || ||| ||||||| |||| Sbjct 90 GCGTGCCTTTTGCATAATGAGCCTACGAGTTACT-GTTACTAGCAAGGTTAATCTGTTCA 32 Query 137 GGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAA 168 || |||||||| ||||||||| || || Sbjct 31 -GCAGAGGAGCCGAAGCGAAAGCGAGTCTGAA 1 >seq957489 Length=559 Score = 132 bits (146), Expect = 9e-29 Identities = 144/190 (76%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 145 AGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGACGCGAAACCT 204 ||||| || |||| |||| |||||| |||||| ||||| | ||||| ||||||| Sbjct 446 AGCCGTAGGGAAACCGAGTCTTAACTGGGCGAT-AGTTGCAAGGTGTAGACCCGAAACCG 388 Query 205 TGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGT 264 |||||||| ||| | ||||||||||| ||||| |||||||||||||| Sbjct 387 GGTGATCTAGCCATGGGCAGGTTGAAGGTTGAGTAACATCAACTGGAGGACCGAACCCAC 328 Query 265 AAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGA 324 |||||||||||||| ||||||| | || |||| ||||||||| |||||||| |||| Sbjct 327 TAACGTTGAAAAGTTAGGGGATGACCTGTGGCTAGGAGTGAAAGGCTAATCAAACCGGGA 268 Query 325 AATAGCTCGT 334 |||||| || Sbjct 267 GATAGCTGGT 258 >SEQ43459 Length=1370 Score = 116 bits (128), Expect = 7e-24 Identities = 126/166 (76%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 170 AGGGCGACG-AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTG 228 ||||||| ||||| |||| ||||| ||||||| | |||||| ||| | ||||||| Sbjct 760 AGGGCGAATTAGTTGCTGGCATTAGACCCGAAACCGGGCGATCTATCCATGGCCAGGTTG 819 Query 229 AAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGA 288 ||| || ||||| | |||||||||||||| ||| |||||||| ||| |||||| Sbjct 820 AAGATGCCGTAACAGGCATTGGAGGACCGAACCCACAAATGTTGAAAAATTTGGGGATGA 879 Query 289 CTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 | | || | || ||||||||| |||||| || ||| |||||| || Sbjct 880 GTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGT 925 >seq793819 Length=3153 Score = 114 bits (126), Expect = 2e-23 Identities = 229/333 (69%), Gaps = 20/333 (6%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGC-CGAGTGATTC 69 ||||| |||||||||| |||||| ||| |||||||||| || |||| ||| | | Sbjct 1104 AGGGGAGTGAAATAGAACCTGAAACCGTTAGCCTACAAGCAGTGGGAGGACGATTTAACG 1163 Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 |||| |||||||| ||| | ||||||| ||||||| || | || |||||||| Sbjct 1164 TCTGACCGCGTGCCTGTTGAAGCATGAGCCGGCGAGTTACAAGTTATG-GC-AGGTTAAG 1221 Query 130 GGCTTCAGGCCCGTT--AGCCGAAGTGAAAGCGAGCCTTAACAGGGCG--ACG----AGT 181 | | ||| |||| ||| ||||||||| || || |||||| ||| | | Sbjct 1222 ACCGAATAG---GTTGCAGCCCAAGCGAAAGCGAGTCTGAATAGGGCGTTACGTCATAAT 1278 Query 182 TGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAAC 241 | || |||| |||| || |||||||| ||| | |||| ||||| ||||| Sbjct 1279 TTGT------AGACCCGAACCCGGGTGATCTAACCATGTCCAGGATGAAGCTTGGGTAAA 1332 Query 242 GCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGG 301 | |||||| |||||||| | |||||||| | ||||||| | || ||||| Sbjct 1333 ACCAAGTGGAGGTCCGAACCGACCGATGTTGAAAAATCGGCGGATGAGGTGTGGTTAGGG 1392 Query 302 GTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 |||||| ||||||| ||| ||| ||||| || Sbjct 1393 GTGAAATGCCAATCGAACCCGGAGCTAGCTGGT 1425 >seq1060892 Length=100 Score = 104 bits (114), Expect = 4e-20 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 257 GAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCA 316 ||||| ||| |||||||||||| || ||||||| | || |||||||||||||||||||| Sbjct 100 GAACCAGTAGACGTTGAAAAGTCTTTGGATGACCTGTGGATAGGGGTGAAAGGCCAATCA 41 Query 317 AACTGGGAAATAGCTCGTAC 336 |||| ||||||||||||||| Sbjct 40 AACTCGGAAATAGCTCGTAC 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 934196552704