Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq3667356 149 9e-34 seq3356550 134 2e-29 seq2390934 116 5e-24 >seq3667356 Length=242 Score = 149 bits (164), Expect = 9e-34 Identities = 106/121 (88%), Gaps = 3/121 (2%) Strand=Plus/Plus Query 108 ATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGT 167 |||| |||||||||||||||| |||| ||||||| ||||||||| | |||| ||| Sbjct 2 ATTTACAAGATTACCCGGACCTTTCGGACAAGGTG---GACTCGTTGCGTGTATCATTGT 58 Query 168 AGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 |||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| Sbjct 59 AGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCCCCAACTTC 118 Query 228 C 228 | Sbjct 119 C 119 >seq3356550 Length=175 Score = 134 bits (148), Expect = 2e-29 Identities = 105/123 (85%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 116 GATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 |||||||| ||||| ||||||||| | | || || ||| | | ||||||||||||||| Sbjct 163 GATTACCCAGACCTTCCGGCCAAGGGCAGACACACGCTGATTCCTTCAGTGTAGCGCGCG 104 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCT 235 |||||||| |||||||||||||||||||||||||||||||| ||||| || ||||| || Sbjct 103 TGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGCGTGG-CT 46 Query 236 AAA 238 ||| Sbjct 45 AAA 43 >seq2390934 Length=120 Score = 116 bits (128), Expect = 5e-24 Identities = 89/103 (86%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| ||| Sbjct 106 GTACAAAGGGCAGGGACGTAATCAACGCGAGC-TGATGACTCGCGCTTACTGGGAA-TTC 49 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103 |||||| ||| || |||| |||| ||||||| ||||||| Sbjct 48 CTCGTTCAAGGGAAATAATTACAATTCCCTATCCCAATCACGA 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723091065630