Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value SEQ43459 87.8 2e-15 seq793819 80.6 2e-13 seq2874673 73.4 4e-11 >SEQ43459 Length=1370 Score = 87.8 bits (96), Expect = 2e-15 Identities = 141/196 (72%), Gaps = 20/196 (10%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| | |||||||| ||| ||||| | ||||||||||| Sbjct 121 GCATACGGTGGATGCCTTGGCAATTGGAGGCGATGAAAGACGTTGGAGCCTGCGAAAAGC 180 Query 62 TACGGGGA-TTGGCACATACGAA---TTGATCCGTAGATATCCGAATGGGGCAACCC-GA 116 | ||||| ||||| || || ||||||| |||| || |||||||| ||||| Sbjct 181 TCTGGGGAGGTGGCA---ACCAACCTTTGATCCAGAGATGTCTGAATGGGGAAACCCACC 237 Query 117 TAT-ATTGGAGATATATCAT-------AACGC-TAGGCGTT---AGGCGAACGTGGGGAA 164 ||| || || | |||| | || | |||| || |||||||| |||||| Sbjct 238 TATCATAAGATAGGTATCCTTTGACTGAATACATAGGTCTTAGGAGGCGAACCAGGGGAA 297 Query 165 CTGAAACATCTAAGTA 180 |||||||||||||||| Sbjct 298 CTGAAACATCTAAGTA 313 >seq793819 Length=3153 Score = 80.6 bits (88), Expect = 2e-13 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 ||||||||| ||||||| | | ||||||| |||||||||| | | ||||| ||| || Sbjct 614 ACGGTGGATTCCTAGGCACACAGAGGCGATGAAGGACGTGGCGACCCACGAAAGGCTTCG 673 Query 66 GGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 |||| | | | | |||| ||| |||| ||||||||||||||||| Sbjct 674 GGGAGCTGGAAGCAAGCTTTGAGCCGAAGATGTCCGAATGGGGCAACCC 722 >seq2874673 Length=138 Score = 73.4 bits (80), Expect = 4e-11 Identities = 74/96 (77%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 85 TGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGATATATCATAACGCTAGG 144 ||| |||| || |||||||||||||||||| ||| ||| ||| ||||||| || | Sbjct 23 TGACCCGTTAATTTCCGAATGGGGCAACCCGGTATGTTGAAGACATATCATCTCGAAA-- 80 Query 145 CGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 | | || ||| || ||||||||||||||||||| Sbjct 81 -GAGAAGCAAACCCGGAGAACTGAAACATCTAAGTA 115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458470505442