Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq528855 230 3e-58 seq793819 141 1e-31 seq1006709 118 1e-24 seq446766 93.3 6e-17 seq1191692 80.6 4e-13 seq3080312 75.2 2e-11 >seq528855 Length=1053 Score = 230 bits (254), Expect = 3e-58 Identities = 205/254 (81%), Gaps = 7/254 (3%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| |||||||||||||||||| ||||| | |||||||| Sbjct 313 CTTAACCTTCCAGCACCGGGCAGGAGTCAGTCCGTATACATCGTCTTAC-GACTTCGCAC 371 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 |||||||||||||| ||||||||||| ||||| || ||||||| || |||| | | Sbjct 372 GGACCTGTGTTTTTGGTAAACAGTCGTTTCCCCCTGGACTCTGCGCCCCTCACCGCCACC 431 Query 121 ACACGTC----GTTCAC--CAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTT 174 |||| | || ||| |||| || |||||| |||| ||||||||||| |||||| Sbjct 432 ACACCGCACGGGTGCACGACAGCTCAGGTCCCCCTTATCCCAAAGTTACGGGGGCATTTT 491 Query 175 GCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGT 234 ||||| |||||| ||||| ||||| ||| ||||| |||| |||||||| ||||| || Sbjct 492 GCCGAGTTCCTTCACCACGATTCACTCGATCGCCTCGGTATACTCTACCTATCCACCAGT 551 Query 235 GTCGGTTTACGGTA 248 ||||||||| |||| Sbjct 552 GTCGGTTTAGGGTA 565 >seq793819 Length=3153 Score = 141 bits (156), Expect = 1e-31 Identities = 179/248 (72%), Gaps = 21/248 (8%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || |||||||| ||| | | ||| || Sbjct 2429 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTGC-GACTTAGCGG 2371 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||||||| | || ||| ||| ||| | Sbjct 2370 AGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTCTTCAGTGCCACCTAC--------- 2320 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | ||| ||| |||| ||||||||||||||||||| ||||||||||||| Sbjct 2319 ------CTTTCGGCAG-----GCACTCCTTCTCCCGAAGTTACGGAGCCATTTTGCCGAG 2271 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | |||| | || | ||||||||||||| ||| |||||||||||||| Sbjct 2270 TTCCTTAGAGAGAGTTACCTCGCGCCCCTTAGTATTCTCAACCACCCCACCTGTGTCGGT 2211 Query 241 TTACGGTA 248 || |||| Sbjct 2210 TTCGGGTA 2203 >seq1006709 Length=100 Score = 118 bits (130), Expect = 1e-24 Identities = 82/93 (88%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 130 TCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAAC 189 |||||| || || |||||||| || ||||||||||| ||||||||||||||||||||| Sbjct 8 TCACCAACATCGGTCCCCCTTCTTCCAAAGTTACGGGGGCATTTTGCCGAATTCCTTAAC 67 Query 190 CACAGTTCACCCGAACGCCTTAGTATTCTCTAC 222 |||||||| | ||||| |||||||||||||||| Sbjct 68 CACAGTTCTCTCGAACTCCTTAGTATTCTCTAC 100 >seq446766 Length=1159 Score = 93.3 bits (102), Expect = 6e-17 Identities = 153/225 (68%), Gaps = 26/225 (12%) Strand=Plus/Plus Query 50 CGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCA 109 ||| || |||| | || ||||||| |||||||| || || || || || |||| Sbjct 575 CGTGTTTGCACAGTGCTATGTTTTTGATAAACAGTTGCAGCCACCTGGTCACTTCGACTC 634 Query 110 CCACCAGCTCAA----CACGTC-GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACG 164 || ||||| | || ||| | ||||||| | || |||||||||||||||||| Sbjct 635 CCCTCAGCTTACGGAGCAAGTCCGATCACCAGAGGGAGCGTACCTTCTCCCGAAGTTACG 694 Query 165 GGGCCATTTTGCCGAATTCCTTAACCACAGTTCAC---------------------CCGA 203 | |||||||||| | |||||| ||| ||||| | | | Sbjct 695 GTACCATTTTGCCTAGTTCCTTCACCCGAGTTCTCTNNNNNNNNNNNNNNNNNNNNNCAA 754 Query 204 ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 |||||| ||||||||||||||||||||||||||||||| |||| Sbjct 755 GCGCCTTGGTATTCTCTACCTGACCACCTGTGTCGGTTTGGGGTA 799 >seq1191692 Length=100 Score = 80.6 bits (88), Expect = 4e-13 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 147 CCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACG 206 ||||||| |||| |||||| | |||||||||| |||||| | || |||| | | | || Sbjct 87 CCTTCTCGCGAACTTACGGAGGTATTTTGCCGAGTTCCTTCAACATCGTTCTCTCAAGCG 28 Query 207 CCTTAGTATTCTCTACCTGACCACCTG 233 |||| |||||||||||| | ||||||| Sbjct 27 CCTTGGTATTCTCTACCAGTCCACCTG 1 >seq3080312 Length=150 Score = 75.2 bits (82), Expect = 2e-11 Identities = 84/111 (76%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| ||||| || ||||| || ||| || || ||| Sbjct 150 CTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCCTATACGTCATCTT-TCGATTTTGCAG 92 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACC 111 | ||||||||||| ||||||||||| | || ||| ||||| || || Sbjct 91 AGCCCTGTGTTTTTGATAAACAGTCGCCTGGACCTCTTCACTGCGGCCCCC 41 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667705366986