Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq3479114 111 1e-22 seq3080312 104 2e-20 seq446766 102 7e-20 seq793819 82.4 7e-14 >seq3479114 Length=193 Score = 111 bits (122), Expect = 1e-22 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| |||| ||||||||||||||||||||||||| |||||| || ||| ||||| Sbjct 108 ACCAGGTGGCTGGGACTGTTTATTAAAAACACAGCACTGTGCAAAATCGTAAGATGACGT 167 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCC 142 ||| |||||||||||||||||||||| Sbjct 168 ATACGGTGTGACGCCTGCCCGGTGCC 193 >seq3080312 Length=150 Score = 104 bits (114), Expect = 2e-20 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 |||||||||||| |||||||||| ||||||||| |||||| ||||||||||| ||| Sbjct 65 GCGACTGTTTATCAAAAACACAGGGCTCTGCAAAATCGAAAGATGACGTATAGGGCCTGA 124 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 | |||||||||||| |||||||||| Sbjct 125 CACCTGCCCGGTGCTGGAAGGTTAA 149 >seq446766 Length=1159 Score = 102 bits (112), Expect = 7e-20 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 23 GGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAA 82 |||||||||||||||||| | | ||||||| |||||| ||||| ||||||||| || Sbjct 657 GGACTTGCTCCGTAAGCTGAGGGGAGTCGAAGTGACCAGGTGGCTGCAACTGTTTATCAA 598 Query 83 AAACACAGCACTCTGCAAACACGAAAGTG 111 ||||| |||||| |||||||||||||||| Sbjct 597 AAACATAGCACTGTGCAAACACGAAAGTG 569 >seq793819 Length=3153 Score = 82.4 bits (90), Expect = 7e-14 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119 ||||| ||||||||||| |||||||||| ||| || || || ||| || |||| Sbjct 2336 AGGCCCAGGCGACTGTTTACCAAAAACACAGGTCTCCGCTAAGTCGCAAGACGATGTATG 2395 Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| |||||||||||| ||||||||||||||| Sbjct 2396 GGGGCTGACGCCTGCCCAGTGCCGGAAGGTTAA 2428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458470505442