Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq528855 93.3 4e-17 seq3731440 91.5 2e-16 seq2568161 75.2 1e-11 >seq528855 Length=1053 Score = 93.3 bits (102), Expect = 4e-17 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| ||||| ||| |||| ||||||| || || | ||||||||| | Sbjct 18 CGGGGTCTTTCCGTCCTGCTGCGCGTAACGAGCATCTTTACTCGTAATGCAATTTCACCG 77 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || ||| ||| ||||||| ||| |||||||||||||||||||||||||| Sbjct 78 AGTTCATGGTGGAGACAGTAGGGAAATCGTTACTCCATTCGTGCAGGTCGGAACTTACCC 137 Query 143 GACAA 147 ||||| Sbjct 138 GACAA 142 >seq3731440 Length=270 Score = 91.5 bits (100), Expect = 2e-16 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCAC 80 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 211 CGGGGTCTTTTCGTCCCGCTGCGGGTAATCGGCATCTTCACCGATACTACAATTTCAC 268 >seq2568161 Length=125 Score = 75.2 bits (82), Expect = 1e-11 Identities = 86/120 (72%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | |||||| | | ||||||| || | | | ||||||| ||| Sbjct 6 CGGGGTCTTTCCGTCTAACCGCGGGAAGCCTGCATCTTGACAGGCAATTCAATTTCGCTG 65 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | | ||||||| ||| |||||||||||||||||||||||||| Sbjct 66 AGTCGATGTTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526164137118