Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value SEQ43459 210 4e-52 seq793819 125 1e-26 seq1106372 116 7e-24 seq630219 107 3e-21 seq3384662 73.4 7e-11 >SEQ43459 Length=1370 Score = 210 bits (232), Expect = 4e-52 Identities = 245/327 (75%), Gaps = 9/327 (3%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| | ||||||||||||||| ||| |||||||||| ||||| | ||| ||||| | Sbjct 118 AGCGCATACGGTGGATGCCTTGGCAATTGGAGGCGATGAAAGACGTTGGAGCCTGCGAAA 177 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| |||||| |||| || ||||||||| |||| || |||||||||||||| | Sbjct 178 AGCTCTGGGGAGGTGGCAACCAACCTTTGATCCAGAGATGTCTGAATGGGGAAACCCACC 237 Query 121 CCTT------TGGGTCATTGCATG-CTGAATACATAGGTATGCAAAG-CGAACGCGGCGA 172 | | ||| || || |||||||||||||| | || ||||| || || Sbjct 238 TATCATAAGATAGGT-ATCCTTTGACTGAATACATAGGTCTTAGGAGGCGAACCAGGGGA 296 Query 173 ACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCG 232 ||||||||||||||||| | ||||||||||||||| |||||||| | ||||| |||| Sbjct 297 ACTGAAACATCTAAGTACCCTGAGGAAAAGAAATCAAACGAGATTCTCTTAGTAGCGGCG 356 Query 233 AGCGAAATGGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATA 292 |||||| |||| ||||| | | ||||| ||| || |||||||| |||||||| Sbjct 357 AGCGAACGGGGAACAGCCTGCAAGTGATAGCAGAAGTGTTAGTGGAACAGTCTGGAAAGT 416 Query 293 GGAGCCATAGCGGGTGATAGCCCCGTA 319 || ||| |||||||||||||||| Sbjct 417 CTGGCGATACAGGGTGATAGCCCCGTA 443 >seq793819 Length=3153 Score = 125 bits (138), Expect = 1e-26 Identities = 177/246 (72%), Gaps = 17/246 (7%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | |||||||||||||||| | | ||| | ||| |||| Sbjct 616 GGTGGATTCCTAGGCACACAGAGGCGATGAAGGACGTGGCGACCCACGAAAGGCTTCGGG 675 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 ||| | || || |||||| ||| |||| ||||||||||| ||||| | Sbjct 676 GAGCTGG-AAGCAAGCTTTGAGCCGAAGATGTCCGAATGGGGCAACCCAGAAA------- 727 Query 130 CATTGCATGCTGAATACATAGG----TATGCAAAGCGAACGCGGCGAACTGAAACATCTA 185 || || ||||||| |||||| |||| ||||||| ||| |||||||||||||| Sbjct 728 CA--GCTCGCTGAATCCATAGGCGAGTATG---AGCGAACCCGGTGAACTGAAACATCTT 782 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGAT 245 |||||| | ||||| ||||| ||| | |||| || ||||||||| ||||||| || | Sbjct 783 AGTAGCCGGAGGAAGAGAAAGCAATAGCGATTTCCCAAGTAGTGGTGAGCGAACGGGAAA 842 Query 246 GAGCCT 251 ||||| Sbjct 843 CAGCCT 848 >seq1106372 Length=100 Score = 116 bits (128), Expect = 7e-24 Identities = 81/92 (88%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 139 CTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGA 198 |||||||||||||| | | |||||||||| ||||||||||||||||||| | | |||| Sbjct 9 CTGAATACATAGGTTAACGAGGCGAACGCGGAGAACTGAAACATCTAAGTACCCGTAGGA 68 Query 199 AAAGAAATCAACCGAGATTCCCAAAGTAGTGG 230 ||||||||||||||||||||| ||||||| || Sbjct 69 AAAGAAATCAACCGAGATTCCGAAAGTAGCGG 100 >seq630219 Length=457 Score = 107 bits (118), Expect = 3e-21 Identities = 180/255 (71%), Gaps = 13/255 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||||||||||| | || ||||||||||||| || | |||||||||| ||| Sbjct 197 GGTGGATGCCTTGGCACCAAGAGCCGATGAAGGACGTTGTGACCTGCGATAAGCCCTGGG 256 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC----CCT-- 123 |||| | | | || ||||||| | | |||||||||||||||| || || Sbjct 257 GAGTTGGTGAGCGAGCTGTGATCCGGGGGTGTCCGAATGGGGAAACCTGGAATGTCCGGA 316 Query 124 -TTGGGTCAT-TG--CATGC--TGAATACATAGGTATGCAAAGCG-AACGCGGCGAACTG 176 | | ||| || | ||| ||||| ||||| || | ||||||| ||| || Sbjct 317 GTAGTGTCCGGTGGCCCTGCCCTGAATGTATAGGGGTGTGGGTGGTAACGCGGGGAAGTG 376 Query 177 AAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCG 236 |||||||| |||| | | ||||| ||||| ||| | |||||| |||||||||||||| Sbjct 377 AAACATCTTAGTACCCGTAGGAAGAGAAAACAAGTGTGATTCCGTGAGTAGTGGCGAGCG 436 Query 237 AAATGGGATGAGCCT 251 ||| ||| ||| || Sbjct 437 AAAGCGGAGGAGGCT 451 >seq3384662 Length=179 Score = 73.4 bits (80), Expect = 7e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 6 ACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGC 63 ||| ||||||||||||||| || ||||||||||||||||| || |||||||||||| Sbjct 83 ACACGGTGGATGCCTTGGCAGTTGGAGGCGATGAAGGACGTATTAACTTGCGATAAGC 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 881955298112