Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophionereis_20fasciata_20[genbank_20GCA_5F900067615.1_202017-02-27] 3,968,282 sequences; 1,184,528,790 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3777070 235 2e-59 seq2097627 109 2e-21 seq346999 86.0 2e-14 seq253170 82.4 2e-13 >seq3777070 Length=298 Score = 235 bits (260), Expect = 2e-59 Identities = 233/300 (78%), Gaps = 6/300 (2%) Strand=Plus/Minus Query 14 TCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAAC 73 |||||| ||||||||||||||| |||| |||||||||||||| ||||| ||||||| Sbjct 298 TCTACATGAGATTTCTGTTCTCATTGAGCTGACCTTAGGACACCTGTGTTATCGTTTAAC 239 Query 74 AGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGC 133 |||||||||||||||||||||||||||||||||| |||| | | ||| | ||| Sbjct 238 AGATGTGCCGCCCCAGCCAAACTCCCCACCTGACGTTGTCTCCCGCGTAGATTACCGCGC 179 Query 134 GAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGT----TCCGCTTCATTGATTA 189 ||| ||| || | |||| || |||||| | | || | ||| || || Sbjct 178 GAAACGGCTTGACACTAGAATCAGGCGCCCGAAGACGACTGGCTTCTACGTCACGGAATA 119 Query 190 AGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTC 249 ||||||| ||| || |||||||||||||| || | || | ||||||||||||| Sbjct 118 AGTAAAACAACATTACAAGTAGTGGTATTTCATCGTCGGCAAAGC--CTCCCACTTATTC 61 Query 250 TACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 309 |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 60 TACACCTCATAAGTCATTTCACAACGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 1 >seq2097627 Length=113 Score = 109 bits (120), Expect = 2e-21 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||||||||||| ||| ||| ||||||| | ||||| ||||||| |||| Sbjct 105 CTCCCACCTATTCTACACCCCTCTTGTCTCTTCACAAGACCAGACTAAAGTCAAGGTCAA 46 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341 || ||||||||||||| | |||||| ||||||||| || |||||| Sbjct 45 CATGGTCTTCTTTCCCTGATGATTCTGCCAAGCCCATTGCCTTGG 1 >seq346999 Length=463 Score = 86.0 bits (94), Expect = 2e-14 Identities = 81/102 (79%), Gaps = 11/102 (11%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||||||||||| |||| ||| | || | ||| | |||||||| Sbjct 3 CTCCCACCTATTCTACACCCCTCATGTC--TAGACCA-----GACC----TTAAGCTCAA 51 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||||||||||||||||| |||||| |||||||||||||||| Sbjct 52 CAGGGTCTTCTTTCCCCGATGATTCTGCCAAGCCCGTTCCCT 93 >seq253170 Length=971 Score = 82.4 bits (90), Expect = 2e-13 Identities = 74/92 (80%), Gaps = 7/92 (8%) Strand=Plus/Minus Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG-----CGTCACTAA 409 ||||| ||| | ||||||||| ||||||||| ||||| ||||||| |||| ||| Sbjct 872 AGATAATAGCT--GGACAGTGGAAATCTCGTTTATCCAATCATGCGGGTTACGTCCCTAT 815 Query 410 TTAGATGACGAGGCATTTGGCTACCTTAAGAG 441 ||||||||||| ||| |||||||||| |||| Sbjct 814 TTAGATGACGAAGCAAATGGCTACCTTTAGAG 783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1570310652736