Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1221 181 3e-43 seq16185 170 6e-40 seq73193 140 1e-30 seq58480 95.1 4e-17 seq28873 86.0 2e-14 seq12129 86.0 2e-14 >seq1221 Length=46602 Score = 181 bits (200), Expect = 3e-43 Identities = 149/177 (84%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 331 GTCGGGGTTT-TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT 389 ||||| | || ||||||||||||||||||||||||||||| ||||||||||||| | Sbjct 34704 GTCGGCGCTTGTTAGCATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAGG--GCA 34647 Query 390 ACTA--TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT 447 ||| || || ||| || |||||||||||||||||| ||||||||| || ||| | Sbjct 34646 ACTCGTTCCAAGGAACCATGACTGATTTAATGAGCCATCCGCAGTTTCGCTTGATACAAA 34587 Query 448 GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| |||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 34586 -CTTGTACTAACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 34531 >seq16185 Length=66658 Score = 170 bits (188), Expect = 6e-40 Identities = 173/223 (78%), Gaps = 13/223 (6%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGA-GCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || |||| | | ||||||| ||||| | ||||||||| Sbjct 29181 GTACTCATTCCAATTACAGGGCCTAAAAAAAGTCCTGTATTGTTATTTTTCGTCACTACC 29122 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 29121 TCCCCGTGTCGAGAGTGGGTAATTTGCGCACCTGCTGCCTTCCTTGGATGTGGTAGC--- 29065 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||| ||| ||||||||||| |||| ||||||||| || |||| || Sbjct 29064 ------TACTCCCTTTCCAAAATCGAACCCTGATTCTCCGTTACCCATTACGACCA--GT 29013 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 |||| || |||| ||||| | |||||||| | |||| Sbjct 29012 AGGCGCATAATGACCCATAGAAAG-TAATAGGGCATATGTTTG 28971 >seq73193 Length=118696 Score = 140 bits (154), Expect = 1e-30 Identities = 102/117 (87%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||| Sbjct 66858 GTACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC 66799 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGC 116 ||||||||||| || |||||||||||||| |||||||| |||||||||||| ||||| Sbjct 66798 TCCCCGTGTCGAGAATGGGTAATTTGCGCCCCTGCTGCATTCCTTGGATGTTGTAGC 66742 Score = 78.8 bits (86), Expect = 3e-12 Identities = 74/95 (78%), Gaps = 7/95 (7%) Strand=Plus/Minus Query 128 CTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACT 187 |||||| ||| |||||||||||| |||| ||||||| |||||||||||| | Sbjct 66578 CTCCCTTTCCAGAATCGAACCCTGATTCTCCGTTACG-------ACCATGGTAGGCGCAT 66526 Query 188 ATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 | |||||||||||||||||||||||| |||| Sbjct 66525 AATGAACCATCGAAAGTTGATAGGGCAGAGGTTTG 66491 >seq58480 Length=96658 Score = 95.1 bits (104), Expect = 4e-17 Identities = 77/91 (85%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTA 473 |||||||||||| ||| ||| || ||| | |||| |||||| | |||||||||||| Sbjct 77534 TTAATGAGCCATCAGCAATTTTGCTTGATACAA-GCTTGTACTTACAAATGCATGGCTTA 77592 Query 474 ATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||| |||||||||||||||||||| Sbjct 77593 ATCTTTGAGA-AAGCATATGACTACTGGCAG 77622 >seq28873 Length=56241 Score = 86.0 bits (94), Expect = 2e-14 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 448 GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||| |||| | |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 18164 GCTTTTACTAACACATGCATGGCTTAATCTTTGAGACAAGGATATGACTACTGGCAG 18108 >seq12129 Length=64295 Score = 86.0 bits (94), Expect = 2e-14 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 26 AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTG 85 |||||| ||||||| ||||| | |||||||||||||||||||| || ||||||||||| Sbjct 6822 AAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGTGTCGAGAGTGGGTAATTTG 6763 Query 86 CGCGCCT 92 ||||||| Sbjct 6762 CGCGCCT 6756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509256687616