Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiothrix_20spiculata_20[genbank_20GCA_5F000969725.1_202015-02-03] 75,696 sequences; 2,764,315,159 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq70036 131 1e-25 seq72101 127 2e-24 seq39745 118 8e-22 seq8201 111 1e-19 >seq70036 Length=130556 Score = 131 bits (144), Expect = 1e-25 Identities = 166/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||||||| | ||||||||| ||||| || || | ||||| ||| | | | || Sbjct 51383 GAACCCCTACTTAGAGAGAATCCCCGTCGATTTGTCATCTTCCCAATCCAATTCCAAGAC 51442 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| ||||||||| ||||| || || || |||||||| || |||||||| ||| || Sbjct 51443 ATCTGGCTCATGTACAAGAAGGCAGAGGCGTCATTCTGGACAGTCGAGGAGGTGGATCTG 51502 Query 61147 TCCAAAGACATGAATGACTGGGAGC-GTTTATCGAGCGGTGAACAACATTTCATTAAACA 61205 ||||| |||||| | | ||||| | | | | || | || | || || ||| || Sbjct 51503 TCCAAGGACATGGGTCATTGGGACAAGCTCAACAAG-GACGAGAAGCACTTTATTTCGCA 51561 Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAAT 61251 |||||||||||||||||| || || || |||||||| |||||| Sbjct 51562 TGTGTTGGCGTTCTTTGCTGCCAGTGATGGCATCGTCAACGAGAAT 51607 Score = 118 bits (130), Expect = 8e-22 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458 |||||||| || ||||| || || | || || | ||| || |||||||| |||| ||| Sbjct 52986 TTCAATGCAATTGAGACTATGCCACCAGTCAAACAGAAGGCAGATTGGGCACTCAACTGG 53045 Query 61459 ATCACCAGT-ACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGG 61517 |||| | |||| | | || |||||||||||| || | || || || | |||||||| Sbjct 53046 ATCAACGCCGACAATGCC-ACGTTTGGTGAACGAGTGGTTGCTTTCGCCGCTGTCGAGGG 53104 Query 61518 TGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCC 61577 | |||||| || || ||||| || ||||| ||||||||||| | || | ||||| Sbjct 53105 CATCTTTTTCTCGGGTTCCTTTGCTGCTATCTTCTGGTTGAAGAAGAGGGGTGTCATGCC 53164 Query 61578 CGGTCTGACCTTCAGCAATGAGTTGAT 61604 ||| | || ||| |||||||||||| Sbjct 53165 AGGTTTAACTTTCTCCAATGAGTTGAT 53191 >seq72101 Length=85746 Score = 127 bits (140), Expect = 2e-24 Identities = 166/227 (73%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 61026 TGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGA 61085 |||||||||| | ||||||||| ||||| ||||| | ||||| ||| | | | || Sbjct 44663 TGAACCCCTACTTAGAGAGAATCCCCGTCGATTCGTCATCTTCCCAATCCAATTCCAAGA 44604 Query 61086 TATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTT 61145 || |||| ||||||||| ||||| || || || |||||||| || ||||| || ||| | Sbjct 44603 CATCTGGCTCATGTACAAGAAGGCAGAGGCGTCATTCTGGACAGTCGAGGAAGTGGATCT 44544 Query 61146 GTCCAAAGACATGAATGACTGGGAGC-GTTTATCGAGCGGTGAACAACATTTCATTAAAC 61204 |||||| |||||| | | ||||| | | | | || | || | || || ||| || Sbjct 44543 GTCCAAGGACATGGGTCATTGGGACAAGCTCAACAAG-GACGAGAAGCACTTTATTTCAC 44485 Query 61205 ATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAAT 61251 |||||||||| |||||||| || || || ||||| || |||||| Sbjct 44484 ATGTGTTGGCCTTCTTTGCTGCCAGTGATGGCATCGTTAACGAGAAT 44438 Score = 118 bits (130), Expect = 8e-22 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458 |||||||| || ||||| || || | || || | ||| || |||||||| |||| ||| Sbjct 42322 TTCAATGCAATTGAGACTATGCCACCAGTCAAACAGAAGGCAGATTGGGCACTCAACTGG 42263 Query 61459 ATCACCAGT-ACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGG 61517 |||| | |||| | | || |||||||||||| || | || || || | |||||||| Sbjct 42262 ATCAATGCTGACAATGCC-ACGTTTGGTGAACGAGTGGTTGCTTTCGCCGCTGTCGAGGG 42204 Query 61518 TGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCC 61577 | |||||| || || ||||| || ||||| ||||||||||| | || | ||||| Sbjct 42203 CATCTTTTTCTCAGGTTCCTTTGCTGCTATCTTCTGGTTGAAGAAGAGGGGTGTCATGCC 42144 Query 61578 CGGTCTGACCTTCAGCAATGAGTTGAT 61604 ||| | || ||| |||||||||||| Sbjct 42143 AGGTTTAACTTTCTCCAATGAGTTGAT 42117 >seq39745 Length=16847 Score = 118 bits (130), Expect = 8e-22 Identities = 132/174 (76%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 66296 TGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGT 66355 ||||| |||||||| |||||||||||||||||||||| | ||| |||| ||| || Sbjct 4107 TGTGGGCACATCAGGCACCAATCACCATCCTGTTCTACCCTTTCCATGAATAAATCTGGA 4048 Query 66356 ATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTC-AATGCCGTGATTTTTGCG 66414 ||||| | |||||||| |||||||| || | | ||| || || | ||| | ||| Sbjct 4047 ATCCACATAGCGTAGAAAAGATCGCGAGCCCTGTTCTCTTCTGATCCGGTGTTCTTTTTA 3988 Query 66415 CAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAA 66468 ||| || | |||||| |||| || |||||||| ||||| || |||||||| || Sbjct 3987 CAA-TCCAAGAACTCGTAGATATCTGCATGCCAAGGTTCAAGATAGATGGCAAA 3935 Score = 111 bits (122), Expect = 1e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| || || || ||||| ||||| |||||||| || ||||| |||| |||||||| Sbjct 6000 GGTGTATTCTACTATTTCAGTGCAAAGATTACTACATTTGATGGTTCCCAGGTTCTGTTG 5941 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||||||||| | |||||| ||| ||||||| |||||| || | || ||||| ||||| Sbjct 5940 ATTACTCTTCCTATTGCAATGATCTTTGTACAGCATGTAAGGGTTCCCTGTCTCTACTTG 5881 Query 66169 GGACTCAATGATGGCGTGCCA 66189 || |||||||| || | ||| Sbjct 5880 GGCTTCAATGATTGCTTTCCA 5860 >seq8201 Length=93372 Score = 111 bits (122), Expect = 1e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| || || || ||||| ||||| |||||||| || ||||| |||| |||||||| Sbjct 62752 GGTGTATTCTACTATTTCAGTGCAAAGATTACTACATTTGATGGTTCCCAGGTTCTGTTG 62811 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||||||||| | |||||| ||| ||||||| |||||| || | || ||||| ||||| Sbjct 62812 ATTACTCTTCCTATTGCAATGATCTTTGTACAGCATGTAAGGGTTCCCCGTCTCTACTTG 62871 Query 66169 GGACTCAATGATGGCGTGCCA 66189 || |||||||| || | ||| Sbjct 62872 GGCTTCAATGATTGCTTTCCA 62892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397201225629440