Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq552 219 3e-52 >seq552 Length=297145 Score = 219 bits (242), Expect = 3e-52 Identities = 497/730 (68%), Gaps = 18/730 (2%) Strand=Plus/Plus Query 61186 GAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAAT 61245 ||| |||| |||||| |||||| |||||||||| || || || || || || Sbjct 245936 GAAAAACAGTTCATTTCACATGTTCTGGCGTTCTTCGCAGCCAGTGATGGCATAGTTGGA 245995 Query 61246 GAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTAC 61305 ||||| || | ||| | ||| | |||| | ||||| | ||||| | ||||||||| Sbjct 245996 GAGAACTTGGTCGAAAGGTTCTATCGGGAGATACAAGTTCCCGAGGCAAGATGTTTCTAC 246055 Query 61306 GGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACG 61365 || || || || |||||||| || | ||||| || |||||| || | | || || || Sbjct 246056 GGATTTCAAATCGCCATGGAAAACATTCACTCCGAAATGTACTGTCTGTTAATTGACACT 246115 Query 61366 TACATCAGGGAGCG-GGCG-GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGG 61423 ||||||||||| | || | ||| | ||| | || ||||||| || || || | || Sbjct 246116 TACATCAGGGACCCAGGAGAGAAGGAGAAGGTTT--TCAATGCTATTGAAACTTTCCCCT 246173 Query 61424 CGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC---ACCAGTACAACGGCTACAT 61480 || || || || | ||||| || || ||||| | ||| | || ||||| | Sbjct 246174 GTGTTAAAAAAAAGGCACAGTGGGCATTTAAATGGATGGATAAAAGTTCTACAGCTACTT 246233 Query 61481 TTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTG 61540 |||||||| || | | || ||||||| |||||||| |||| ||| ||| |||||| Sbjct 246234 TTGGTGAAAGAGTTGTTGCGTTTGCGGCTGTCGAGGGGATATTCTTCTCTGGTGCGTTTG 246293 Query 61541 CCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGT 61600 | |||| |||||| | |||||| | || || ||||| |||||||| || ||||||| Sbjct 246294 CATCAATTTTTTGGATCAAGAAAAGAGGCCTAATGCCTGGTCTGACATTTTCTAATGAGT 246353 Query 61601 TGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATC 61660 |||| || | ||||| ||| | || ||||||||||| || ||| ||| || Sbjct 246354 TGATTTCCAGGGACGAAGGCCTTCACTGTGATTTTGCATGCCTG--ATTTTTTCGC-ATT 246410 Query 61661 TGGTGAATCGTCC-GTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATC 61719 | | | | || |||| || || || | |||||||| |||| ||||| | || Sbjct 246411 TAAGGCAGAGGCCAAGCGGA-GAACGGGTTAGCGAGATTGTATGTGATGCGGTTGCCATA 246469 Query 61720 GAACAGGAATTTCTGACTGACGCTTTGCCCGTCTC-ACTCATCGGCATGAATTGTGGACT 61778 || | ||||| || | || || |||| || | | || || ||||| ||| Sbjct 246470 GAGAAAGAATTCTGGATAGGGGCCTT-ACCGTGTCGTTTGTTGGGTATCAATTG-CCACT 246527 Query 61779 -AATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAAG 61836 ||| | |||| ||||| |||||||||||| | |||||||| | ||| || |||| Sbjct 246528 CCATGGCAGAGTACATTGAGTTTGTTGCCGACAGGCTGTTGGTGGCATTGGGACTTGAAA 246587 Query 61837 CGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAG 61896 | || ||||| |||||||| || || || ||||| | ||||| |||| ||||| Sbjct 246588 AGTAT-TATAAAACGAAAAATCCTTTCCCATTTATGGAAAACATTTCTTTGGAAGGCAAA 246646 Query 61897 ACGAATTTTT 61906 | ||||||| Sbjct 246647 GCTAATTTTT 246656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397558633919120