Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq51424 104 1e-20 seq2336 89.7 3e-16 seq2718 80.6 1e-13 seq2473 80.6 1e-13 >seq51424 Length=480 Score = 104 bits (114), Expect = 1e-20 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 24 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 83 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | ||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 84 CATCGCCAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 140 >seq2336 Length=134322 Score = 89.7 bits (98), Expect = 3e-16 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || | |||| || |||| | |||| ||| | Sbjct 74889 GAACCCAAAGACTTTGGTTTCCCGCAGACTGCCCGCCGCGTCATTAGAGTAACGTCGGCG 74948 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | ||||||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 74949 GATCGCCAGTCGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 75005 >seq2718 Length=47833 Score = 80.6 bits (88), Expect = 1e-13 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || | |||| || |||| |||| || | Sbjct 46483 GAACCCAAAGACTTTGGTTTCCCGCAGACTGCCCGCCGCGTCATTGGAGTAACGCCGGCG 46424 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | ||||||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 46423 GATCGCCAGTCGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 46367 Score = 78.8 bits (86), Expect = 5e-13 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || | |||| || |||| |||| || | Sbjct 34563 GAACCCAAAGACTTTGGTTTCCCGCAGACTGCCCGCCGCGTCATGGGAGTAACGCCGGCG 34504 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCG 116 |||| | ||||||||| ||||| ||||| |||| | ||||||||||||| ||||| Sbjct 34503 GATCGCCAGTCGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCG 34448 >seq2473 Length=113163 Score = 80.6 bits (88), Expect = 1e-13 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || | |||| | |||| | |||| ||| | Sbjct 89256 GAACCCAAAGACTTTGGTTTCCCGCAGACTGCCCGCTGCGTCATTAGAGTAACGTCGGCG 89315 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | ||||||||| ||||| ||||| |||| | ||||||||||||| ||| || Sbjct 89316 GATCGCCAGTCGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTTGA 89372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278242922370