Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2718 185 2e-44 seq155 167 4e-39 seq51424 165 1e-38 seq6951 136 7e-30 seq185 131 3e-28 seq11534 120 6e-25 seq6366 73.4 7e-11 seq5256 73.4 7e-11 >seq2718 Length=47833 Score = 185 bits (204), Expect = 2e-44 Identities = 194/250 (78%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAATACATTAGCA 129 || ||||||||||||||||| |||||||||||||||||| || | | | |||| Sbjct 46118 ACGTTTACTTTGAAAAAATTGGAGTGTTCAAAGCAGGCCGACCGCCTGGACAGCAGAGCA 46177 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATG 188 ||||||||| ||||||||| | |||||||||| |||||||| | || || |||||| Sbjct 46178 TGGAATAATGGAATAGGACCT-CGGTTCTATTGCGTTGGTTTTCGGAACTCGAGGTAATG 46236 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||| ||||| | |||||| | ||| | ||| ||||||||||||||||||| Sbjct 46237 ATTAAGAGGGACTGACGGGGGCATTCGTACTGCGGTGTGAGAGGTGAAATTCTTGGATCG 46296 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 ||||| | | ||||||||||| || ||||| |||||||||||||||| |||||| Sbjct 46297 CCGCAAGACGACCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGA 46355 Query 309 AAGTTAGGGG 318 ||||||| || Sbjct 46356 AAGTTAGAGG 46365 Score = 168 bits (186), Expect = 1e-39 Identities = 193/253 (76%), Gaps = 10/253 (4%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAAT--ACATTAG- 127 || ||||||||||||||||| |||||||||||||||||| | || | ||| | | Sbjct 34198 ACGTTTACTTTGAAAAAATTTGAGTGTTCAAAGCAGGCC---GACCGCCTGGACAGTCGA 34254 Query 128 -CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTA 185 |||||||||| |||| |||| | |||||||||| ||||||| | || || ||| Sbjct 34255 TCATGGAATAAGGGAATGGGACCT-CGGTTCTATTGCTTTGGTTTTCGGAACTCGAGGTA 34313 Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||| ||||| | |||||| | ||| | ||| |||||||||||||||||| Sbjct 34314 ATGATTAAGAGGGACTGACGGGGGCATTCGTACTGCGGTGTGAGAGGTGAAATTCTTGGA 34373 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 | ||||| | | ||||||||||| || ||||| |||||||||||||||| ||| Sbjct 34374 TCGCCGCAAGACGACCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAA 34432 Query 306 CGAAAGTTAGGGG 318 |||||||||| || Sbjct 34433 CGAAAGTTAGAGG 34445 >seq155 Length=168712 Score = 167 bits (184), Expect = 4e-39 Identities = 179/232 (77%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAATACATTAGCA 129 || ||||||||||||||||| |||||||||||||||||| || | | | |||| Sbjct 131406 ACGTTTACTTTGAAAAAATTGGAGTGTTCAAAGCAGGCCGACCGCCTGGACAGCAGAGCA 131465 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATG 188 ||||||||| ||||||||| | |||||||||| |||||||| | || || |||||| Sbjct 131466 TGGAATAATGGAATAGGACCT-CGGTTCTATTGCGTTGGTTTTCGGAACTCGAGGTAATG 131524 Query 189 ATTAATAGGGATAGTCGGGGGTG--TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||||| ||||| | |||||| || ||| | | ||| ||||||||||||||||||| Sbjct 131525 ATTAAGAGGGACTGACGGGGGGCATTCGGTACTGCAGTGTGAGAGGTGAAATTCTTGGAT 131584 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298 ||||| | | ||||||||||| || ||||| |||||||||||||| Sbjct 131585 CGCCGCAAGACGACCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 131636 >seq51424 Length=480 Score = 165 bits (182), Expect = 1e-38 Identities = 206/278 (74%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 423 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 364 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||||||||| || | |||| ||| |||||||| ||||||||| ||| Sbjct 363 -CAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGTCGG 305 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 304 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 245 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 244 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 185 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 184 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 148 >seq6951 Length=33648 Score = 136 bits (150), Expect = 7e-30 Identities = 178/240 (74%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAG-AGTGTTCAAAGCAGGCCTTTG--CTCGAATACATTAG 127 || ||||||||||||||||| | ||||||||||||||||| | || || || || Sbjct 8243 ACGTTTACTTTGAAAAAATTGGGAGTGTTCAAAGCAGGCCGACGGCCTGGACAGCAG-AG 8185 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAA 186 ||||||||||| ||||||||| | ||||||| || ||| |||| | || || |||| Sbjct 8184 CATGGAATAATGGAATAGGACCT-CGGTTCTGTTGCGTTTGTTTTCGGAACTCGAGGTAA 8126 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||||||| | ||| | ||||| | || | ||| ||||||||||||||||||| Sbjct 8125 TGATTAAGAAGGACTGATGGGGGCATTCGTGCTACGGTGTTAGAGGTGAAATTCTTGGAT 8066 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 ||||| | | ||||||||||| || ||||| |||||||||| || | ||||| Sbjct 8065 CGTCGCAAGACGACCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATAAAACTTTGAAC 8006 >seq185 Length=191823 Score = 131 bits (144), Expect = 3e-28 Identities = 176/240 (73%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAA--TTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAATACATTAG 127 || ||||||||||||||| || ||||||||| ||||||| || | | | || Sbjct 88739 ACGTTTACTTTGAAAAAAAATTGGAGTGTTCATTGCAGGCCGACCGCCTGGACAGCAGAG 88680 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAA 186 ||||||||||| ||||||||| | | |||||||| |||||||| | || || |||| Sbjct 88679 CATGGAATAATGGAATAGGACCT-CTGTTCTATTGCGTTGGTTTTCGGAACTCGAGGTAA 88621 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||||||| |||| | |||||| | ||| | ||| ||||||| ||||||||||| Sbjct 88620 TGATTAAGAGGGTCTGACGGGGGCATTCGTAGTGCGGTGTAAGAGGTGGAATTCTTGGAT 88561 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 | ||||| | | ||||||||||| || ||||| || ||||||| || | ||||| Sbjct 88560 CGTTGCAAGACGACCGACTGCGAAAGCATTTGCCAAGAATCTTTTCATGAAACTTTGAAC 88501 >seq11534 Length=26662 Score = 120 bits (132), Expect = 6e-25 Identities = 169/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC-TTTGCTCGAATACATTAGCA 129 || || ||||||||||| ||||||||||||||||||||| ||| | | |||| Sbjct 3387 ACGTTAACTTTGAAAAATTTAGAGTGTTCAAAGCAGGCCGACCGCTTTGACAGCAGAGCA 3446 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATG 188 ||||||||| ||||||||| | |||||||||| |||||||| | || || ||||| Sbjct 3447 TGGAATAATTGAATAGGACCT-CGGTTCTATTGGGTTGGTTTTCGGAACTCGAGGTAATA 3505 Query 189 ATTAATAGGGAT---AGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||| || ||| | ||| | | ||| ||| |||||||||||||||| | Sbjct 3506 ATTACTAAAGATGACTGACGGAAGCATTCGTACGTCGGTGTGAGAGGTGAAATTCTTGAA 3565 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298 | ||||| | | ||||||||||| || ||||| ||||| |||||||| Sbjct 3566 TCGCCGCAAGACGACCGACTGCGAAAGCATTTGCCAAGAATGTTCTCATTAAT 3618 >seq6366 Length=31062 Score = 73.4 bits (80), Expect = 7e-11 Identities = 84/113 (74%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||| ||||| | |||||| | ||| | ||| ||||||||||||||||||| Sbjct 21601 ATTAAAAGGGACTGACGGGGGCATTCGTACTGCGGTGTGAGAGGTGAAATTCTTGGATCG 21542 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG 301 ||||| | | ||||||||||| || ||||| |||||||||| ||| || Sbjct 21541 CCGCAAGACGACCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATAAATAAG 21489 >seq5256 Length=35928 Score = 73.4 bits (80), Expect = 7e-11 Identities = 82/110 (75%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||| ||||| | |||||| | ||| | ||| |||||||||||||||||||| Sbjct 14355 ATTAAGAGGGACTGACGGGGGCATTCGTACTGCGGTGTGAGAGGTGAAATTCTTGGATTG 14414 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298 ||||| | | |||||| |||| | ||||| |||||||||||||| Sbjct 14415 CCGCAAGACGATCGACTGCGGAAGCATATGCCAAGAATGTTTTCATTAAT 14464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914649205184