Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2718 273 3e-71 seq16937 107 3e-21 seq936 95.1 2e-17 seq2026 73.4 6e-11 >seq2718 Length=47833 Score = 273 bits (302), Expect = 3e-71 Identities = 218/259 (84%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 || || || | || ||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 46867 ACCCGCTGACCCCTTCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 46808 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||||||| |||| || | | ||||| | |||| | |||||||||||||| |||| Sbjct 46807 CCTGTTATTGC-TCAATCTCGCGT-GGCTGAACGCCACTTGTCCCTCTAAGAAGTCAGCG 46750 Query 122 ACCAACCATA--GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || | | || | | |||||||||| | | ||||||||||||||||||||| Sbjct 46749 CCCGGCGCGGCGGCCGGCGCGACTATTTAGCAAGCCAGAGTCTCGTTCGTTATCGGAATT 46690 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 46689 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCAAG 46630 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 46629 AAAGAGCTCTCAATCTGTC 46611 >seq16937 Length=16740 Score = 107 bits (118), Expect = 3e-21 Identities = 62/64 (97%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225 ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 14852 TCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGTACCACCA 14911 Query 226 CCCA 229 |||| Sbjct 14912 CCCA 14915 >seq936 Length=108691 Score = 95.1 bits (104), Expect = 2e-17 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225 |||||||| || ||||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct 38939 TCGTTATCAGATTTAACCAGACAAATCGCTCCACCTACTAAGAACGGCCATGCACCACCA 38998 Query 226 CC 227 || Sbjct 38999 CC 39000 >seq2026 Length=75924 Score = 73.4 bits (80), Expect = 6e-11 Identities = 43/45 (96%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 168 GTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGG 212 ||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 35923 GTTATTGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGG 35879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796335447423