Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1975 396 5e-108 seq617 233 3e-59 seq3422 80.6 5e-13 seq2718 78.8 2e-12 seq4780 75.2 2e-11 >seq1975 Length=65808 Score = 396 bits (438), Expect = 5e-108 Identities = 267/296 (90%), Gaps = 2/296 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||| || | | |||||| ||||||||||||||||||||||||||||| Sbjct 372 TACTGAGCAGGATTGCCGTAGCGGCGACCTCTCATCAGTAGGGTAAAACTAACCTGTCTC 313 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 312 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCG 253 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 252 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 193 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 192 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 133 Query 240 TCAAATTTCGAGGGAC-TAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||||| | ||| | | |||||||||||||||||| |||||| ||| |||||||| Sbjct 132 TCAAACTCCGAAGCTCAAAAAGGATCGATAGGCCACGCTTTCACGGTCTGTATTCA 77 >seq617 Length=136390 Score = 233 bits (258), Expect = 3e-59 Identities = 161/181 (89%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||| ||||| ||| || | | ||| | |||||||||||||||||||||||||||||| Sbjct 127907 TACTGAGCGGGATTGCCGTAGCGGCCTC--TCATCAGTAGGGTAAAACTAACCTGTCTCA 127964 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||| Sbjct 127965 CAACGGTCTAAACCCAGCTCATGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCGA 128024 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 128025 ATTCTGCTTGGCAATGATAGGAAGAGCCGACATCGAAGGATAAAAAAGCAACGTCGCTAT 128084 Query 181 G 181 | Sbjct 128085 G 128085 >seq3422 Length=62777 Score = 80.6 bits (88), Expect = 5e-13 Identities = 73/91 (80%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 155 GAAGGATCAAAA-AGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTG 213 ||||||| | || |||||||| || |||||||||| |||||||||||| |||||||||| Sbjct 9775 GAAGGATAACAACAGCAACGTTGCAATGAACGCTTAGCTGCCACAAGCTAGTTATCCCTA 9834 Query 214 TGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 | |||| || | ||||||| || |||| Sbjct 9835 TAACAACTCTTTCGACACCTCTTGCTGCAAA 9865 >seq2718 Length=47833 Score = 78.8 bits (86), Expect = 2e-12 Identities = 62/73 (85%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||| || | | |||||| ||||||||||||||||||||||||||||| Sbjct 42606 TACTGAGCAGGATTGCCGTAGCGGCGACCTCTCATCAGTAGGGTAAAACTAACCTGTCTC 42547 Query 60 ATGACGGTCTAAA 72 | ||||||||||| Sbjct 42546 ACGACGGTCTAAA 42534 >seq4780 Length=47590 Score = 75.2 bits (82), Expect = 2e-11 Identities = 43/44 (98%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCT 192 ||||||||||||||||||||||||||||||||||||||||| || Sbjct 18820 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGACT 18863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853885796448