Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq57874 230 5e-58 seq57542 152 1e-34 seq57296 149 1e-33 seq57504 138 2e-30 seq57503 127 4e-27 >seq57874 Length=325 Score = 230 bits (254), Expect = 5e-58 Identities = 180/210 (86%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 |||||||||||||||||||| | ||| |||||||| ||| || |||| |||||| ||| Sbjct 78 TTTACAATCCGAAGACCTTCAT-CACTCACGCGGCGTTG-CTCCGTCAGACTTTCGTCCA 135 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||||||||||||||||||||| ||| |||||||||||| ||| | Sbjct 136 TTGCGGAAGATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAAT 195 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| | | ||||||||||||||| | ||| |||| ||||||||||| ||||||||||||| Sbjct 196 GTGGCCGTTCATCCTCTCAGACCGGCTACTGATCATCGCCTTGGTGGGCCATTACCTCAC 255 Query 182 CAACTAGCTAATCCGAC-CTAGGCTCATCT 210 ||||||||||||| ||| | |||| ||||| Sbjct 256 CAACTAGCTAATCGGACGCGAGGC-CATCT 284 >seq57542 Length=394 Score = 152 bits (168), Expect = 1e-34 Identities = 106/118 (90%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 |||||||||||||||||||||| | | |||||||| | | ||| |||||| |||| |||| Sbjct 279 TTTACAATCCGAAGACCTTCTTCCTC-CACGCGGCGTCG-CTGCATCAGGGTTTCCCCCA 336 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 119 |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 337 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCA 394 >seq57296 Length=560 Score = 149 bits (164), Expect = 1e-33 Identities = 107/121 (88%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 |||||||||||||||||||||| | |||||||| ||| ||| |||||| |||| |||| Sbjct 442 TTTACAATCCGAAGACCTTCTTCCTT-CACGCGGCGTTG-CTGCATCAGGGTTTCCCCCA 499 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| |||||| ||||||||||||||||||||||||||||| |||||||||||| ||| | Sbjct 500 TTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAAT 559 Query 122 G 122 | Sbjct 560 G 560 >seq57504 Length=408 Score = 138 bits (152), Expect = 2e-30 Identities = 103/118 (87%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| ||||| ||||||| | |||||||| ||| |||| |||||||| |||||| Sbjct 293 TTTACAACCCGAAAGCCTTCTTCCTT-CACGCGGCGTTG-CTGGGTCAGGCTTGCGCCCA 350 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 119 ||| ||||||||||||||||||||||||||||||||||||| |||| ||||||| ||| Sbjct 351 TTGCCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCA 408 >seq57503 Length=406 Score = 127 bits (140), Expect = 4e-27 Identities = 104/124 (84%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||| |||| |||||| ||| |||||||| | | ||| ||||| |||| || Sbjct 283 CTTTACATAGCGAACTACTTCTT-CACTCACGCGGCGTCG-CTGCATCAGAGTTTCCTCC 340 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 341 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAA 400 Query 121 TGTG 124 |||| Sbjct 401 TGTG 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071354838240