Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq2718 102 8e-20 seq155 102 8e-20 seq51424 87.8 2e-15 seq6951 80.6 3e-13 seq11534 73.4 4e-11 >seq2718 Length=47833 Score = 102 bits (112), Expect = 8e-20 Identities = 133/179 (74%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCA 68 || ||||||||||||||||| ||| |||||||||||||| || | | | | || Sbjct 46118 ACGTTTACTTTGAAAAAATTGGAGTGTTCAAAGCAGGCCGACCGCCTGGACAGCAGAGCA 46177 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTAAT 127 ||||||||| ||||||||| | |||||||||| || ||||| | ||| | | ||||| Sbjct 46178 TGGAATAATGGAATAGGACCT-CGGTTCTATTGCGTTGGTTT-TCGGAACTCGAGGTAAT 46235 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| || | ||| | |||||| | ||| | ||| | ||||||||||||||||| Sbjct 46236 GATTAAGAGGGACTGACGGGGGCATTCGTACTGCGGTGTGAGAGGTGAAATTCTTGGAT 46294 Score = 89.7 bits (98), Expect = 5e-16 Identities = 133/182 (73%), Gaps = 10/182 (5%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAAT--ACATT--A 65 || ||||||||||||||||| ||| |||||||||||||| | || | ||| | | Sbjct 34198 ACGTTTACTTTGAAAAAATTTGAGTGTTCAAAGCAGGCC---GACCGCCTGGACAGTCGA 34254 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGT 124 |||||||||| |||| |||| | |||||||||| | ||||| | ||| | | || Sbjct 34255 TCATGGAATAAGGGAATGGGACCT-CGGTTCTATTGCTTTGGTTT-TCGGAACTCGAGGT 34312 Query 125 AATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGG 184 |||||| || | ||| | |||||| | ||| | ||| | ||||||||||||||| Sbjct 34313 AATGATTAAGAGGGACTGACGGGGGCATTCGTACTGCGGTGTGAGAGGTGAAATTCTTGG 34372 Query 185 AT 186 || Sbjct 34373 AT 34374 >seq155 Length=168712 Score = 102 bits (112), Expect = 8e-20 Identities = 135/181 (75%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCA 68 || ||||||||||||||||| ||| |||||||||||||| || | | | | || Sbjct 131406 ACGTTTACTTTGAAAAAATTGGAGTGTTCAAAGCAGGCCGACCGCCTGGACAGCAGAGCA 131465 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTAAT 127 ||||||||| ||||||||| | |||||||||| || ||||| | ||| | | ||||| Sbjct 131466 TGGAATAATGGAATAGGACCT-CGGTTCTATTGCGTTGGTTT-TCGGAACTCGAGGTAAT 131523 Query 128 GATAAATACGGATAGTCGGGGG--TGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||| || | ||| | |||||| || ||| | | ||| | |||||||||||||||| Sbjct 131524 GATTAAGAGGGACTGACGGGGGGCATTCGGTACTGCAGTGTGAGAGGTGAAATTCTTGGA 131583 Query 186 T 186 | Sbjct 131584 T 131584 >seq51424 Length=480 Score = 87.8 bits (96), Expect = 2e-15 Identities = 127/176 (72%), Gaps = 5/176 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC---GAATACATTACCAT 69 ||||||||||||||||||||| || ||||||||||| || | |||| | | Sbjct 387 TTTACTTTGAAAAAATTAGAGTGT-CAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 329 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| |||||||||||||| ||||| | ||| | | |||| Sbjct 328 GGAATAATGGAATAGGACCGTCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 270 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 269 TTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 214 >seq6951 Length=33648 Score = 80.6 bits (88), Expect = 3e-13 Identities = 131/181 (72%), Gaps = 7/181 (4%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAG-AGCGTTCAAAGCAGGCCTTTG--CTCGAATACATTAC 66 || ||||||||||||||||| | || |||||||||||||| | || || || | Sbjct 8243 ACGTTTACTTTGAAAAAATTGGGAGTGTTCAAAGCAGGCCGACGGCCTGGACAGCAG-AG 8185 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTA 125 ||||||||||| ||||||||| | ||||||| || || |||| | ||| | | ||| Sbjct 8184 CATGGAATAATGGAATAGGACCT-CGGTTCTGTTGCGTTTGTTT-TCGGAACTCGAGGTA 8127 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| || | ||| | ||||| | || | ||| | |||||||||||||||| Sbjct 8126 ATGATTAAGAAGGACTGATGGGGGCATTCGTGCTACGGTGTTAGAGGTGAAATTCTTGGA 8067 Query 186 T 186 | Sbjct 8066 T 8066 >seq11534 Length=26662 Score = 73.4 bits (80), Expect = 4e-11 Identities = 79/102 (77%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCA 68 || || ||||||||||| |||||| |||||||||||||| ||| | | | || Sbjct 3387 ACGTTAACTTTGAAAAATTTAGAGTGTTCAAAGCAGGCCGACCGCTTTGACAGCAGAGCA 3446 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 ||||||||| ||||||||| | |||||||||| || ||||| Sbjct 3447 TGGAATAATTGAATAGGACCT-CGGTTCTATTGGGTTGGTTT 3487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511701492320