Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq366117 201 2e-49 seq444815 141 2e-31 seq341544 134 3e-29 seq2636106 107 4e-21 seq338761 95.1 2e-17 seq2892277 87.8 3e-15 >seq366117 Length=3063 Score = 201 bits (222), Expect = 2e-49 Identities = 249/335 (74%), Gaps = 12/335 (4%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCG-- 61 ||||| ||||| |||||| ||| |||||| || |||||||||| |||||||||| Sbjct 3009 CCCGACAAGGGGAGTGAAACAGATCCTGAAATCGGAAGCCTACAAGCAGTCGGAGCCGCC 2950 Query 62 -AGTGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGC 120 || | |||||||||||| ||||||| |||||| | | ||| || | || | ||| Sbjct 2949 AAGCG---CGGTGACGGCGTACCTTTTGTATAATGGGTCAGCGACTTCAT-GTGTCGAGC 2894 Query 121 GAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAG 180 || ||||| || ||| ||| || || ||||||||| || || |||||| || Sbjct 2893 AAGCTTAAGCCGTT-AGGTG---TAGGCGCAGCGAAAGCGAGTCTGAATAGGGCGCTAAG 2838 Query 181 TTGGTGGCGCTA-GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTA 239 || | | | ||| ||||||| |||||||| ||| ||||||||||||| |||| Sbjct 2837 TTCGACGTATGACGACCCGAAACCAGGTGATCTATCCATGAGCAGGTTGAAGGTTGGGTA 2778 Query 240 ACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAG 299 || | |||||||||||||| || || |||||||| || | |||||||| | || ||| Sbjct 2777 ACACCAACTGGAGGACCGAACCCGTGAATGTTGAAAAATTCTGGGATGACTTGTGGATAG 2718 Query 300 GGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 |||||||||||||||||||| ||| |||||| || Sbjct 2717 GGGTGAAAGGCCAATCAAACCTGGACATAGCTGGT 2683 >seq444815 Length=5597 Score = 141 bits (156), Expect = 2e-31 Identities = 226/319 (71%), Gaps = 9/319 (3%) Strand=Plus/Minus Query 1 TAGCCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC 60 || |||| | ||||| |||||| || |||||| ||| ||| | ||||| ||| ||||| Sbjct 3191 TACCCCGGG-AGGGGAGTGAAAGAGTTCCTGAAACCGGTCGCATGCAAGCCGTCAGAGCC 3133 Query 61 GAGTGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGC 120 ||| ||||| ||||||||||||| | ||||||||| ||||||||| | || Sbjct 3132 T-GTGT---GGTGATGGCGTGCCTTTTGAAGAATGAGCCTGCGAGTTAGTGATGCGTGGC 3077 Query 121 GAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAG 180 |||||||| | || | || || || ||||||||| | | |||||| ||| Sbjct 3076 GAGGTTAA---CCCGTGGTGGGGGAGTCGTAGCGAAAGCGAGTCCGATAAGGGCG-TGAG 3021 Query 181 TTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAA 240 | | | |||||| |||| | ||||||||| ||| | |||| ||||| |||||| Sbjct 3020 TCGCGTGTTCTAGACCCGAAGCGGTGTGATCTATCCATGGCCAGGATGAAGCGTCGGTAA 2961 Query 241 CGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGG 300 ||| |||||| ||||||| |||||||| |||||| | | || |||| Sbjct 2960 GACGTCGTGGAGGTCCGAACCCACTTCAGTTGAAAATGGAGGGGATGAGTTGTGGATAGG 2901 Query 301 GGTGAAAGGCCAATCAAAC 319 ||||||||||||||||||| Sbjct 2900 GGTGAAAGGCCAATCAAAC 2882 >seq341544 Length=690 Score = 134 bits (148), Expect = 3e-29 Identities = 103/122 (84%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 215 CCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAA 274 ||| | ||||||||||| | |||||| | |||||||||||||| || |||||||| Sbjct 273 CCATGGGCAGGTTGAAGCTGTGGTAACACACAGTGGAGGACCGAACCAGTTGACGTTGAA 332 Query 275 AAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 |||| || ||||||| | ||||||||||||||||||||||||||| ||||||||||||| Sbjct 333 AAGTCTTTGGATGACCTGTGGGTAGGGGTGAAAGGCCAATCAAACTCGGAAATAGCTCGT 392 Query 335 AC 336 || Sbjct 393 AC 394 Score = 98.7 bits (108), Expect = 2e-18 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 13 GGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGGT 72 ||| |||||| ||| |||||| ||| |||||||||||||||| ||| | | | | || Sbjct 109 GGGAGTGAAAGAGAACCTGAAACCGTACGCCTACAAGCGGTCGAAGCACATTAACTGTGT 168 Query 73 GACGGCGTGCCTTTTGCATAATGAGCCTA 101 ||||||||||||||||||||||||||||| Sbjct 169 GACGGCGTGCCTTTTGCATAATGAGCCTA 197 >seq2636106 Length=238 Score = 107 bits (118), Expect = 4e-21 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 206 GTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGTA 265 |||||||| ||| | ||||||||||| ||||| ||||||||||||||| Sbjct 4 GTGATCTAGCCATGGGCAGGTTGAAGGTTGAGTAACATCAACTGGAGGACCGAACCGACT 63 Query 266 AACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAA 325 || |||||||| || ||||||||| | || ||||||||||||||||||||||| ||| Sbjct 64 AATGTTGAAAAATTAGCGGATGACTTGTGGCTAGGGGTGAAAGGCCAATCAAACCTGGAG 123 Query 326 ATAGCTCGT 334 |||||| || Sbjct 124 ATAGCTGGT 132 >seq338761 Length=448 Score = 95.1 bits (104), Expect = 2e-17 Identities = 101/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 145 AGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGACGCGAAACCT 204 ||||| || |||| |||| | ||||||||||| ||| | ||| ||||| ||||||| Sbjct 435 AGCCGTAGAGAAATCGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCA 377 Query 205 TGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGT 264 |||||||||||| | |||| ||||| |||||||| || |||||| ||||||| Sbjct 376 AGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCAC 317 Query 265 AAACGTTGAAAA 276 || |||||||| Sbjct 316 TAATGTTGAAAA 305 >seq2892277 Length=395 Score = 87.8 bits (96), Expect = 3e-15 Identities = 99/132 (75%), Gaps = 3/132 (2%) Strand=Plus/Minus Query 206 GTGATCTACCCACGAGCAGGTTGAAG---TCGCGGTAACGCGTGATGGAGGACCGAACCG 262 |||||||| ||| |||||||||||| | |||||| || ||||| ||||| Sbjct 172 GTGATCTAACCATGAGCAGGTTGAAAAATTTATGGTAACATAATTTGAAGGACTGAACCC 113 Query 263 GTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGG 322 ||| |||||||| || |||||||| | || |||||||||||||| ||||||||| Sbjct 112 GTATCTGTTGAAAAAGGTTGGGATGACTTGTGGTTAGGGGTGAAAGGCTAATCAAACTTA 53 Query 323 GAAATAGCTCGT 334 | ||||||| || Sbjct 52 GGAATAGCTGGT 41 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943553176576