Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq369036 87.8 2e-15 seq2514905 77.0 3e-12 >seq369036 Length=1182 Score = 87.8 bits (96), Expect = 2e-15 Identities = 141/196 (72%), Gaps = 20/196 (10%) Strand=Plus/Minus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| | |||||||| ||| ||||| | ||||||||||| Sbjct 538 GCATACGGTGGATGCCTTGGCAATTGGAGGCGATGAAAGACGTTGGAGCCTGCGAAAAGC 479 Query 62 TACGGGGA-TTGGCACATACGAA---TTGATCCGTAGATATCCGAATGGGGCAACCC-GA 116 | ||||| ||||| || || ||||||| |||| || |||||||| ||||| Sbjct 478 TCTGGGGAGGTGGCA---ACCAACCTTTGATCCAGAGATGTCTGAATGGGGAAACCCACC 422 Query 117 TAT-ATTGGAGATATATCAT-------AACGC-TAGGCGTT---AGGCGAACGTGGGGAA 164 ||| || || | |||| | || | |||| || |||||||| |||||| Sbjct 421 TATCATAAGATAGGTATCCTTTGACTGAATACATAGGTCTTAGGAGGCGAACCAGGGGAA 362 Query 165 CTGAAACATCTAAGTA 180 |||||||||||||||| Sbjct 361 CTGAAACATCTAAGTA 346 >seq2514905 Length=211 Score = 77.0 bits (84), Expect = 3e-12 Identities = 81/107 (76%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 |||| |||||| ||| | ||||||| ||| ||||||||| |||||| |||| | ||| Sbjct 40 GGTGAATGCCTTGGCAGTAAGAGGCGATGAAAGACGTGATACTCTGCGATAAGCCATGGG 99 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || | ||| | ||||||| | ||| || |||||||||||||| Sbjct 100 GAGCTGAGAATAAGCTTTGATCCATGGATTTCTGAATGGGGCAACCC 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462913170498