Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq3002212 363 4e-98 seq444815 255 1e-65 seq2844597 242 9e-62 seq2671760 217 4e-54 >seq3002212 Length=1337 Score = 363 bits (402), Expect = 4e-98 Identities = 328/409 (80%), Gaps = 4/409 (1%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| | |||| |||| |||||||||| |||||||||||||||||||||||| |||| || Sbjct 839 TACCCGGAGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGC 898 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||| ||||||||||||||||||||| | ||| |||||| | |||| |||| || Sbjct 899 TAGCGTTGCTCGGAATTACTGGGCGTAAAGGGAGCGTAGGCGGACATTTAAGTCAGGGGT 958 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 |||||||| ||||| ||||| |||||||| |||| |||| | || |||| || ||| Sbjct 959 GAAATCCCGGGGCTCAACCTCGGAATTGCCTTTGATACTGGGTGTCTTGAGTATGAGAGA 1018 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| ||| |||||| ||||||| ||||||||| ||| |||||||| ||| Sbjct 1019 GGTGTGTGGAACTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAAGAACACCAGTGG 1078 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 ||||||| | | |||| | ||||||||| | || |||||||||||||||||||||| Sbjct 1079 CGAAGGCGACACACTGGCTCATTACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACAG 1138 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||||||||||||||||| |||||||| ||||||| | ||||| | | Sbjct 1139 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGATTGCTAGTTG-TCGGGATGCA-T 1196 Query 363 TCCTT--GGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | || ||| ||| ||||||||| | ||| ||||||||||| ||| Sbjct 1197 GCATTTCGGTGACGCAGCTAACGCATTAAGCAATCCGCCTGGGGAGTAC 1245 >seq444815 Length=5597 Score = 255 bits (282), Expect = 1e-65 Identities = 301/404 (75%), Gaps = 9/404 (2%) Strand=Plus/Minus Query 12 AATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAA 71 || |||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 5036 AAGAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTGATACGTAGGGTGCGAGCGTTGT 4977 Query 72 TCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCC 131 |||| ||| ||||||||||| | || ||| ||||| | | | ||| |||| Sbjct 4976 CCGGATTTATTGGGCGTAAAGGGCTCGTAGGTGGTTGATCGCGTCGGAAGTGTAATCTTG 4917 Query 132 GGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGG 191 |||||||||| | ||| || | || | |||| ||| | || || | ||| Sbjct 4916 GGGCTTAACCCTGAGCGTGCTTTCGATACGGGTTGACTTGAGGAAGGTAGGGGAGAATGG 4857 Query 192 AATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAG 251 |||||| ||| ||| ||| |||||| |||||| |||||||||||| |||||||||| | Sbjct 4856 AATTCCTGGTGGAGCGGTGGAATGCGCAGATATCAGGAGGAACACCAGTGGCGAAGGCGG 4797 Query 252 CCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATA 311 | ||||| |||||||| | | |||||||||||||||| |||||| ||||||| Sbjct 4796 TTCTCTGGGCCTTTCCTGACGCTGAGGAGCGAAAGCGTGGGGAGCGAACAGGCTTAGATA 4737 Query 312 CCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGG--GATT-TAC---TTCC 365 |||||||||||||||| |||||| | ||||| ||| ||| ||| || |||| Sbjct 4736 CCCTGGTAGTCCACGCTGTAAACGGTGGGTACTAGGTGTGGGGTCCATTCCACGGGTTCC 4677 Query 366 TTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || |||||||||||| | |||| ||||||||||| ||| Sbjct 4676 ---GTGCCGTAGCTAACGCTTTAAGTACCCCGCCTGGGGAGTAC 4636 >seq2844597 Length=341 Score = 242 bits (268), Expect = 9e-62 Identities = 193/231 (84%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 180 AGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAA 239 |||||| |||||||| || ||||||| |||||||||||||| || || ||||||| || Sbjct 3 AGAGGGTAGTGGAATTTCAGGTGTAGCGGTGAAATGCGTAGAGATCTGAAGGAACATCAG 62 Query 240 TGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAA 299 |||||||||| | ||||| | | |||||| || | | ||||||||||||||||||| Sbjct 63 TGGCGAAGGCGACTGCCTGGACTGATACTGACACTGAGGTGCGAAAGCGTGGGGAGCAAA 122 Query 300 CAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGG-GATT 358 ||||||||||||||||||||||||||||| |||||||| || ||||||||||||| || | Sbjct 123 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGTCTACTAGTTGTTGGGAGACT 182 Query 359 TACTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | | ||| |||||| |||||||||| |||| ||||||||||||| ||| Sbjct 183 TGATCTCTTAGTAACGAAGCTAACGCGATAAGTAGACCGCCTGGGGAGTAC 233 >seq2671760 Length=249 Score = 217 bits (240), Expect = 4e-54 Identities = 153/175 (87%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||||| |||| ||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 73 TACCTACAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGC 132 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||||||||||||||||||||||||||| ||| |||||| | ||| || ||| ||| Sbjct 133 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGCGCGTAGGCGGATTTGTCAGTCAGATGT 192 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTG 177 |||| ||| ||||| ||||| ||||||||||||| ||||| | ||||||| || Sbjct 193 GAAAGCCCTGGGCTCAACCTAGGAATTGCATTTGATACTGCGAGTCTAGAGTATG 247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1250828717632