Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq444815 230 3e-58 seq366117 141 1e-31 seq2408961 122 1e-25 >seq444815 Length=5597 Score = 230 bits (254), Expect = 3e-58 Identities = 205/254 (81%), Gaps = 7/254 (3%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| |||||||||||||||||| ||||| | |||||||| Sbjct 1724 CTTAACCTTCCAGCACCGGGCAGGAGTCAGTCCGTATACATCGTCTTAC-GACTTCGCAC 1782 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 |||||||||||||| ||||||||||| ||||| || ||||||| || |||| | | Sbjct 1783 GGACCTGTGTTTTTGGTAAACAGTCGTTTCCCCCTGGACTCTGCGCCCCTCACCGCCACC 1842 Query 121 ACACGTC----GTTCAC--CAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTT 174 |||| | || ||| |||| || |||||| |||| ||||||||||| |||||| Sbjct 1843 ACACCGCACGGGTGCACGACAGCTCAGGTCCCCCTTATCCCAAAGTTACGGGGGCATTTT 1902 Query 175 GCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGT 234 ||||| |||||| ||||| ||||| ||| ||||| |||| |||||||| ||||| || Sbjct 1903 GCCGAGTTCCTTCACCACGATTCACTCGATCGCCTCGGTATACTCTACCTATCCACCAGT 1962 Query 235 GTCGGTTTACGGTA 248 ||||||||| |||| Sbjct 1963 GTCGGTTTAGGGTA 1976 >seq366117 Length=3063 Score = 141 bits (156), Expect = 1e-31 Identities = 180/247 (73%), Gaps = 12/247 (5%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||| ||||||||||||||||| || ||||| ||| || | | ||||||| Sbjct 1743 TTAACCTTCAGGCACCGGGCAGGCGTCAGACCCTATACGTCGCATTGCTG-CTTCGCAGA 1801 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| |||||||||||| ||| || | ||| || || ||| Sbjct 1802 GCCCTGTGTTTTTGCTAAACAGTCGCTACCCCCTGGCTTGTGCCACTCAGTCCTGCT--- 1858 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 | | | || | | ||| | || | ||||||||||| | || |||||||| | Sbjct 1859 -------TGCGCAAGGTGAGTCACGC-TTATTCCGAAGTTACGCGTGCAATTTGCCGAGT 1910 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||| | || ||||| | | |||||||| |||| ||||||||||||||||||||||||| Sbjct 1911 TCCTTCAGCATAGTTCTCTCAAACGCCTTGGTATGCTCTACCTGACCACCTGTGTCGGTT 1970 Query 242 TACGGTA 248 | |||| Sbjct 1971 TCGGGTA 1977 >seq2408961 Length=195 Score = 122 bits (134), Expect = 1e-25 Identities = 88/102 (86%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 147 CCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACG 206 ||||||||||||||||||| |||||||||| | |||||| ||| ||||| | | | || Sbjct 16 CCTTCTCCCGAAGTTACGGTACCATTTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCG 75 Query 207 CCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 |||| ||||||||||||||||||||||||||||||| |||| Sbjct 76 CCTTGGTATTCTCTACCTGACCACCTGTGTCGGTTTGGGGTA 117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 674175557034