Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq444815 313 5e-83 seq366117 223 7e-56 seq1787166 150 4e-34 seq1697694 147 5e-33 >seq444815 Length=5597 Score = 313 bits (346), Expect = 5e-83 Identities = 292/375 (78%), Gaps = 27/375 (7%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||||| || | | | |||||||||||||| || || |||||||| |||||||| Sbjct 1543 GCATCTTTACTCGTAATGCAATTTCACCGAGTTCATGGTGGAGACAGTAGGGAAATCGTT 1602 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||||||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1603 ACTCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTA 1662 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 ||||||| ||||||||||||||||||||||||||| ||| || | | || |||| ||| Sbjct 1663 TAGTTACCACCGCCGTTTACTGGGGCTTAAGTTCACCGCTACGCATACACTCACAGTTCC 1722 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 ||||||||||||||||||||||||| ||||| | ||||||||||||| |||||| ||| Sbjct 1723 CCTTAACCTTCCAGCACCGGGCAGGAGTCAGTCCGTATACATCGTCTTACGACTTCGCAC 1782 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC------------ 294 |||||||||||||||||||||||| || ||| ||||||| || Sbjct 1783 GGACCTGTGTTTTTGGTAAACAGTCGTTTCCCCCTGGACTCTGCGCCCCTCACCGCCACC 1842 Query 295 ------------TG--TCATAG-ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTT 339 || | || |||| |||||| |||| ||||||||||| |||||| Sbjct 1843 ACACCGCACGGGTGCACGACAGCTCAGGTCCCCCTTATCCCAAAGTTACGGGGGCATTTT 1902 Query 340 GCCGAGTTCCTTAAC 354 |||||||||||| || Sbjct 1903 GCCGAGTTCCTTCAC 1917 >seq366117 Length=3063 Score = 223 bits (246), Expect = 7e-56 Identities = 286/401 (71%), Gaps = 49/401 (12%) Strand=Plus/Plus Query 2 ACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAA 61 |||| |||||||||| |||| | ||||||||| ||| |||| | ||||||||| || Sbjct 1539 ACCCCGCATCTTCACGGGGAATTCAATTTCACTGAGCCTATGCTGGAGACAGTGGGGAAG 1598 Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1599 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 1658 Query 122 CGTTAT--------------------------AGTTACGGCCGCCGTTTACTGGGGCTTA 155 |||||| |||||||||||||| |||||| Sbjct 1659 CGTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCCGCCGTTTACCTGGGCTTC 1718 Query 156 AGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTC 215 || ||||| ||| | ||| |||| ||||||||| |||||||||||||||| Sbjct 1719 AG--------TTCGA-CGCTTTCACATCTCCCTTTAACCTTCAGGCACCGGGCAGGCGTC 1769 Query 216 AGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTC---- 271 || ||||||| ||| |||| ||| ||||| |||||||||||| ||||||||| Sbjct 1770 AGACCCTATACGTCGCATTGCTGCTTCGCAGAGCCCTGTGTTTTTGCTAAACAGTCGCTA 1829 Query 272 -------GCTTGGGCCTATTCTCTGCGGCCTG-TCATAGACAGGCACCCCTTCTCCCTAA 323 ||||| ||| | || | | || || || | || || | ||| | || || Sbjct 1830 CCCCCTGGCTTGTGCC-ACTCAGTCCTGCTTGCGCAAGGTGAGTCA-CGCTTATTCCGAA 1887 Query 324 GTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 |||||| | || ||||||||||||||| | ||||||||| Sbjct 1888 GTTACGCGTGCAATTTGCCGAGTTCCTTCAGCATAGTTCTC 1928 >seq1787166 Length=133 Score = 150 bits (166), Expect = 4e-34 Identities = 115/134 (86%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAG--TGCCC 58 ||| | |||||||||| | |||| ||||||||| |||||| || ||||||| || || Sbjct 132 TACACAGCATCTTCACTGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGTGGCC 73 Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 | | ||||| || ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 72 A--TGGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 15 Query 119 GACCGTTATAGTTA 132 |||||||||||||| Sbjct 14 GACCGTTATAGTTA 1 >seq1697694 Length=128 Score = 147 bits (162), Expect = 5e-33 Identities = 111/129 (86%), Gaps = 4/129 (3%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAG--TGCCC 58 ||| | |||||||||| | |||| ||||||||| |||||| || ||||||| || || Sbjct 127 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGTGGCC 68 Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 | || ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 67 A--TCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 10 Query 119 GACCGTTAT 127 ||||||||| Sbjct 9 GACCGTTAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1030459390208