Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq444815 300 5e-79 seq454181 273 6e-71 seq2685042 246 9e-63 seq2844597 165 2e-38 seq2464489 152 1e-34 seq3002212 145 2e-32 seq2389122 141 3e-31 seq365039 140 9e-31 seq2712462 107 6e-21 >seq444815 Length=5597 Score = 300 bits (332), Expect = 5e-79 Identities = 269/335 (80%), Gaps = 3/335 (1%) Strand=Plus/Minus Query 165 GCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAAC 224 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4469 GCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAAC 4410 Query 225 CCTTAAGCTTAGTTGCCATCA--TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAA 282 |||| | ||||||| || ||| | |||| |||| | ||| ||||| | ||| Sbjct 4409 CCTTGTTCACTGTTGCCAGCACGTTATGGTGGGGACTCAGTGGAGACCGCCGGGGTCAAC 4350 Query 283 CCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACG 342 |||||||||||||||| |||||||| ||||||||||||||||| ||||| ||| | Sbjct 4349 TCGGAGGAAGGTGGGGATGACGTCAAGTCATCATGCCCCTTATGTCCAGGGCTTCACGCA 4290 Query 343 TGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGT 402 ||||||||||| |||| || | |||| | | |||| ||| |||| | |||| Sbjct 4289 TGCTACAATGGCTGGTACAGAGAGTGGCGAGCCTGTGAGGGTGAGCGAATCTCGGAAAGC 4230 Query 403 TGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAAT 462 | ||||||||||||||| |||||||||||||| |||||| ||| ||||||||||| Sbjct 4229 CGGTCTCAGTTCGGATTGGGGTCTGCAACTCGACCTCATGAAGTCGGAGTCGCTAGTAAT 4170 Query 463 CGTAGATCAGC-ATGCTACGGTGAATACGTTCCCG 496 || |||||||| | ||| ||||||||||||||||| Sbjct 4169 CGCAGATCAGCAACGCTGCGGTGAATACGTTCCCG 4135 Score = 131 bits (144), Expect = 5e-28 Identities = 86/95 (91%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||| | |||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 4638 TACGGCCGCAAGGCTAAAACTCAAAGGAATTGACGGGGCCCCGCACAAGCGGCGGAGCAT 4579 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACC 95 | || ||||||||| |||||||| ||||||||||| Sbjct 4578 GCGGATTAATTCGATGCAACGCGTAGAACCTTACC 4544 >seq454181 Length=858 Score = 273 bits (302), Expect = 6e-71 Identities = 238/300 (79%), Gaps = 22/300 (7%) Strand=Plus/Plus Query 165 GCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAAC 224 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAAC 60 Query 225 CCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACC 284 ||| ||||||||||||||| ||||||| ||||||| ||||||||||| || || Sbjct 61 CCTCGCCATTAGTTGCCATCATTTAGTTGGGAACTCTAATGGGACTGCCGGTGCTAAGCC 120 Query 285 GGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTG 344 ||||||||||||||| |||||||| || ||||| |||||| ||||||||||||||| Sbjct 121 GGAGGAAGGTGGGGATGACGTCAAGTCCTCATGGCCCTTACAGGGTGGGCTACACACGTG 180 Query 345 CTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTG 404 ||||||||| | |||| ||| | ||||| ||||| | Sbjct 181 CTACAATGGCGACTACAGAGG---------------------GTTAATCCTTAAAAGTCG 219 Query 405 TTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCG 464 |||||||||||||||| |||||||||||| |||||| |||||||||||||||||| Sbjct 220 -TCTCAGTTCGGATTGTCCTCTGCAACTCGAGGGCATGAAGTTGGAATCGCTAGTAATCG 278 >seq2685042 Length=253 Score = 246 bits (272), Expect = 9e-63 Identities = 210/255 (82%), Gaps = 3/255 (1%) Strand=Plus/Plus Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 ||||||||||||||||| ||||||||||||| ||||||||||| || | | ||||| Sbjct 1 TAATTCGAAGCAACGCGCAGAACCTTACCAACCCTTGACATCCTGTGCTAACCCGAGAGA 60 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 | | | ||| | ||||| | || ||||||||||| ||||||| ||||||||||||||| Sbjct 61 TCGGGCGTTCAC-TTCGGTG-ACGCAGTGACAGGTGCTGCATGGCTGTCGTCAGCTCGTG 118 Query 187 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCA- 245 |||||||||||| |||||||||| |||||||||||||||| | ||||||||||| || Sbjct 119 TCGTGAGATGTTCGGTTAAGTCCGGCAACGAGCGCAACCCACATCCTTAGTTGCCAGCAG 178 Query 246 TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGT 305 || | ||||||||||||| |||||| |||| || | ||||||||||| ||| ||||| Sbjct 179 TTCGGCTGGGCACTCTAAGGAAACTGCCCGTGATAAGCGGGAGGAAGGTGTGGATGACGT 238 Query 306 CAAATCATCATGCCC 320 ||| || ||||| || Sbjct 239 CAAGTCCTCATGGCC 253 >seq2844597 Length=341 Score = 165 bits (182), Expect = 2e-38 Identities = 102/109 (94%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 231 TACGGCCGCAAGGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 290 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCC 109 |||||||||||||| |||||||||||||||||||| | ||||||||||| Sbjct 291 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTACTCTTGACATCC 339 >seq2464489 Length=203 Score = 152 bits (168), Expect = 1e-34 Identities = 162/210 (77%), Gaps = 9/210 (4%) Strand=Plus/Plus Query 33 ACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTT 92 |||||| ||||||||||||||||||||||||||||||||||| | |||||| ||||||| Sbjct 1 ACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGATACGCGAGGAACCTT 60 Query 93 ACCAAATCTTGACATCCTCT--GACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACA 150 ||| ||| | || | ||| | || | | |||| ||||| || Sbjct 61 ACCTGGGCTTAA-ATGCAGAACGACGGACGTGGAAACATGTCTTTC---TTCGG---ACG 113 Query 151 GAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCC 210 | || ||||| ||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 114 GTCTGCAAGGTGCTGCATGGTTGTCGTCAGCTCGTGCCGTGAGGTGTTGGGTTAAGTCCC 173 Query 211 GCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||||||||||||| || ||||||| Sbjct 174 GCAACGAGCGCAACCCCTATTTCTAGTTGC 203 >seq3002212 Length=1337 Score = 145 bits (160), Expect = 2e-32 Identities = 89/95 (94%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1243 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 1302 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACC 95 ||||||||||||||||||||||| ||||||||||| Sbjct 1303 GTGGTTTAATTCGAAGCAACGCGCAGAACCTTACC 1337 >seq2389122 Length=192 Score = 141 bits (156), Expect = 3e-31 Identities = 153/196 (78%), Gaps = 9/196 (5%) Strand=Plus/Minus Query 33 ACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTT 92 |||||| ||||||||||||||||||||||||||||||||||| | |||||| ||||||| Sbjct 192 ACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGATACGCGAGGAACCTT 133 Query 93 ACCAAATCTT-GACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAG 151 |||| ||| | | ||| | || |||| | ||||| ||| ||||| Sbjct 132 ACCAGGGCTTAAATGTAGGTTGA-CAGGCT-GAGAGATCGGTTT----TTCTTCGGACA- 80 Query 152 AGTGAC-AGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCC 210 | | || ||||| ||||||||||||||||||||||| |||||| ||| |||||||||| Sbjct 79 ACTTACAAGGTGCTGCATGGTTGTCGTCAGCTCGTGCCGTGAGGTGTCAGGTTAAGTCCT 20 Query 211 GCAACGAGCGCAACCC 226 |||||||||||||| Sbjct 19 ATAACGAGCGCAACCC 4 >seq365039 Length=401 Score = 140 bits (154), Expect = 9e-31 Identities = 144/185 (78%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 200 GGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCA--TTAAGTTGGGCA 257 |||||||||| |||||||||||||| | |||||||||| | | | || ||| | Sbjct 1 GGTTAAGTCCTATAACGAGCGCAACCCCTGTTGTTAGTTGCCAGCGAGTCATGTCGGGAA 60 Query 258 CTCTAAGTTGACTGCCGGTGACAAACCG-GAGGAAGGTGGGGACGACGTCAAATCATCAT 316 |||||| ||||||| ||| ||||| | |||||||||||||| ||||||||||||||| Sbjct 61 CTCTAACAAGACTGCCAGTG-CAAACTGTGAGGAAGGTGGGGATGACGTCAAATCATCAC 119 Query 317 GCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACC 376 | |||||| | |||||||||||||||||||||||| |||| | ||||| | | Sbjct 120 GGCCCTTACGTCCTGGGCTACACACGTGCTACAATGGTATGGACAATGAGCAGCCACTTC 179 Query 377 GCGAG 381 ||||| Sbjct 180 GCGAG 184 >seq2712462 Length=263 Score = 107 bits (118), Expect = 6e-21 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 410 AGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGAT 469 ||| ||||||| |||||||||||||||| |||||| ||||||||||||||||| | || Sbjct 17 AGTCCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGCAAAT 76 Query 470 CAGCATGCTACGGTGAATACGTTCCCG 496 ||| ||| | ||||||||||||||||| Sbjct 77 CAGAATGTTGCGGTGAATACGTTCCCG 103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1458782871680