Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq444815 196 9e-48 seq366117 132 9e-29 seq2903806 102 2e-19 seq2626207 93.3 8e-17 seq2668772 80.6 5e-13 >seq444815 Length=5597 Score = 196 bits (216), Expect = 9e-48 Identities = 180/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 |||||||| | | ||| |||||||||||||||||||||||| |||| |||||||||||| Sbjct 1357 GGACAGTGCCTGATGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAGGGTAACGGAGGCG 1298 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 ||||||| | |||||||| ||| ||| || || | | |||| || ||| ||||| | Sbjct 1297 CCCAAAGGTTCCCTCAGCCTGGTTGGTAATCAGGTGGTGAGTGTAAGTGCACAAGGGGGC 1238 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 ||||||| || || || ||| ||||||||||||||||||| || ||||| | ||||| Sbjct 1237 TTGACTGTGAGACTGACAGGTCGAGCAGGGACGAAAGTCGGGACTAGTGATCTGACGGTG 1178 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||| |||||| ||| ||||||||||| ||||| ||||||| Sbjct 1177 GCTTGTGGATGCGCCGTCACTCAACGGATAAAAGGTACCCCGGGGATA 1130 >seq366117 Length=3063 Score = 132 bits (146), Expect = 9e-29 Identities = 176/243 (72%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 59 ATACTACCCCTGTTGTATTGGATTTCTAACCGGACGACGTATAACCGTTGACGGGACAGT 118 |||| |||| | ||| | || |||||||| | ||| || ||| | ||||||| Sbjct 1409 ATACCACCCTTACTGTCGTTGACGTCTAACCGAGGGCCGT-TATCCGGTCCCGGGACATG 1351 Query 119 GTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAG 178 | | ||| |||||||||||||||||||||||| |||| ||||||||||||| | | | Sbjct 1350 GCGTGGTGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAGTGTAACGGAGGCGCGCGATG 1291 Query 179 ATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTG 238 | ||||| || ||||| | || ||||||| |||| ||| | |||||| Sbjct 1290 GTGGGCTCAGACCGGTCGGAAATCGGTCGTCGAGTGCAATGGCATAAGCCCGCCTGACTG 1231 Query 239 CGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATG 298 ||| || |||||| ||||| |||||||||||| | || |||||||| ||| | || || Sbjct 1230 CGAGACTGACAAGTCGAGCAGAGACGAAAGTCGGCCATAGTGATCCGGTGGTCCCGAGTG 1171 Query 299 GAA 301 ||| Sbjct 1170 GAA 1168 >seq2903806 Length=412 Score = 102 bits (112), Expect = 2e-19 Identities = 167/239 (70%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 44 GGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAACC--GGACGACGTATA 101 ||||||| ||| |||| |||| ||| || ||| ||||||| || | | || Sbjct 237 GGAGCCGACCTTGAAATACCACCCTTGTAGTGTTGATGTTCTAACTTAGGCCCCTGAATC 178 Query 102 ACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGT 161 ||||| |||||||| | | ||| |||||||||||||||||| ||||||||||||| Sbjct 177 GGGGTTGA--GGACAGTGCCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCCAAAGAGT 120 Query 162 AACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGC 221 |||||||| || | ||| | || || || ||| | | | || |||| || || Sbjct 119 AACGGAGGAGCACGAAGGTTTGCTAAGTACGGTCGGACATCGTACGGTTAGTGTAATGGT 60 Query 222 AAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATG 280 | ||| | || ||||||| || || ||| |||||| |||||||| || | || || Sbjct 59 AGAAGCAAGCTTAACTGCGAGACAGACACGTCGAGCAGGTACGAAAGTAGGTCATAGTG 1 >seq2626207 Length=235 Score = 93.3 bits (102), Expect = 8e-17 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 251 GTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCG 310 ||| |||||| |||||||| || | || |||||||| ||| ||| |||||| |||| ||| Sbjct 235 GTCGAGCAGGTACGAAAGTAGGTCATAGTGATCCGGTGGTTCTGTATGGAAGGGCCATCG 176 Query 311 CTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| ||||||||||| ||| | ||||||| Sbjct 175 CTCAACGGATAAAAGGTACTCCGGGGATA 147 >seq2668772 Length=248 Score = 80.6 bits (88), Expect = 5e-13 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 125 CGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAG 178 |||| |||||||||||||||||||||||||||| |||||||||||||| | ||| Sbjct 166 CGGGTAGTTTGACTGGGGCGGTCGCCTCCCAAACAGTAACGGAGGCGCGCGAAG 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 952864556608