Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq366117 140 3e-31 seq444815 131 2e-28 seq1787166 127 2e-27 seq1697694 123 3e-26 >seq366117 Length=3063 Score = 140 bits (154), Expect = 3e-31 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | |||||| | | |||||||||| | | | ||||||||||||| Sbjct 1515 GGGTCTTTCCGTCTGACCGCGGGAACCCCGCATCTTCACGGGGAATTCAATTTCACTGAG 1574 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | | | ||||||| ||| |||||||||||||||||||||||||||| Sbjct 1575 CCTATGCTGGAGACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGA 1634 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||| Sbjct 1635 CAAGGAATTTCGCTACCTTAGGACCGTTA 1663 >seq444815 Length=5597 Score = 131 bits (144), Expect = 2e-28 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| ||||| ||| |||| ||||||| || || | ||||||||| | Sbjct 1512 CGGGGTCTTTCCGTCCTGCTGCGCGTAACGAGCATCTTTACTCGTAATGCAATTTCACCG 1571 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || ||| ||| ||||||| ||| |||||||||||||||||||||||||| Sbjct 1572 AGTTCATGGTGGAGACAGTAGGGAAATCGTTACTCCATTCGTGCAGGTCGGAACTTACCC 1631 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTT 201 ||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 1632 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTT 1690 >seq1787166 Length=133 Score = 127 bits (140), Expect = 2e-27 Identities = 100/121 (83%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 54 GCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTG-AGACAGNNNNNNNNNNNN 112 |||||||||| | | | ||||||||||||| || ||| || |||||| Sbjct 126 GCATCTTCACTGCGATTTCAATTTCACTGAG-TCTCGGGTGGAGACAGCGTGGCCATGGT 68 Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 8 Query 173 A 173 | Sbjct 7 A 7 >seq1697694 Length=128 Score = 123 bits (136), Expect = 3e-26 Identities = 99/121 (82%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 54 GCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTG-AGACAGNNNNNNNNNNNN 112 |||||||||| | | | ||||||||||||| || ||| || |||||| Sbjct 121 GCATCTTCACAGCGATTTCAATTTCACTGAG-TCTCGGGTGGAGACAGCGTGGCCATCAT 63 Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 62 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 3 Query 173 A 173 | Sbjct 2 A 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531262766142