Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq2666731 302 9e-80 seq3002212 266 7e-69 seq2385878 201 2e-49 seq444815 187 5e-45 seq2826223 176 9e-42 >seq2666731 Length=247 Score = 302 bits (334), Expect = 9e-80 Identities = 191/204 (94%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| |||||||||||||| ||||| |||||| |||| ||| Sbjct 29 CTTTACAACCCGAAGGCCTTCTT-CACACACGCGGCAT-GGCTGCATCAGGGTTTCCCCC 86 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 87 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 146 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || ||||||||||||||||||||| |||||||| Sbjct 147 TGTGGCTGATCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCCTTACCTCA 206 Query 181 CCAACTAGCTAATCCGACCTAGGC 204 ||||||||||||||| |||||||| Sbjct 207 CCAACTAGCTAATCCCACCTAGGC 230 >seq3002212 Length=1337 Score = 266 bits (294), Expect = 7e-69 Identities = 260/334 (78%), Gaps = 16/334 (5%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 |||||||||| ||||||||| | || |||||||||| ||||| ||||||||||||||| Sbjct 810 TTTACAATCCTAAGACCTTCAT-CATTCACGCGGCAT-GGCTGCGTCAGGCTTTCGCCCA 753 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| ||| |||||||||||||||||||||||||||| ||| |||||||||||| ||| | Sbjct 752 TTGCGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAAT 693 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| Sbjct 692 GTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTACCTCAC 633 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 ||||||||||||| ||| ||| ||| ||||| || |||| Sbjct 632 CAACTAGCTAATCAGACGCGGGCCGCTCT-------AAAGGCGATAA-------ATCTTT 587 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301 | |||| ||| | || |||||||||| |||||| ||||| || || ||| Sbjct 586 CCCCCGAAGGGCACATTCGGTATTAGCACAAGTTTCCCTGAGTTATTCCGAACCTAAAGG 527 Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || |||| | | ||||||||||||||||| || Sbjct 526 CACGTTCCCACGTGTTACTCACCCGTCCGCCACT 493 >seq2385878 Length=192 Score = 201 bits (222), Expect = 2e-49 Identities = 148/171 (87%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| |||||||||| |||| ||||||| || | ||||||||| || ||||||||||||| Sbjct 190 TCACTCACGCGGCAT-GGCTAGATCAGGGTTGCCCCCATTGTCTAAGATTCCCCACTGCT 132 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 ||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| | || Sbjct 131 GCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTTGCTGATCATCCTCTAAAAC 72 Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 ||| || |||||| | |||||| ||||||||| ||||||||| |||||| Sbjct 71 CAGCTATAGATCGTAGACTTGGTAGGCCATTACCCCACCAACTATCTAATC 21 >seq444815 Length=5597 Score = 187 bits (206), Expect = 5e-45 Identities = 158/192 (82%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| |||||| || || | | | |||||||| ||| ||| ||||||||| |||||| Sbjct 5079 TTTACAACCCGAAGGCCGTCATCC-CGCACGCGGCGTTG-CTGCATCAGGCTTCCGCCCA 5136 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| |||||||||||||||||||||||||||||||||||| |||| ||||||| ||| | Sbjct 5137 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAAT 5196 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| | | ||| |||||||| || | ||| || |||||||| ||||| |||| ||| Sbjct 5197 GTGGCCGGTCACCCTCTCAGGCCGGCTACCCGTCAAAGCCTTGGTAAGCCACTACCCCAC 5256 Query 182 CAACTAGCTAAT 193 |||| |||| || Sbjct 5257 CAACAAGCTGAT 5268 >seq2826223 Length=326 Score = 176 bits (194), Expect = 9e-42 Identities = 155/192 (81%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||| ||||||||||| || | ||||||||||||||||| |||||||||||| Sbjct 20 CACGCGGCAT-GGCTGGATCAGAGTTGCCTCCATTGTCCAATATTCCTCACTGCTGCCTC 78 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||| |||||||| | | Sbjct 79 CCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCCCCCTCTCAGGGCCCCT 138 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208 || ||||| | |||||| |||| |||||| |||||| | ||||| ||| | ||||| Sbjct 139 ACCTATCGTAGTCTTGGTAAGCCGTTACCTTACCAACAAACTAATAGGACGCATACTCAT 198 Query 209 CTGATAGCGCAA 220 || ||| || || Sbjct 199 CTTATACCGTAA 210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1039770770240