Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq444815 659 0.0 seq366117 336 8e-90 seq2636106 170 7e-40 seq341544 161 3e-37 seq2892277 116 1e-23 seq338761 109 2e-21 seq369036 96.9 1e-17 seq226038 75.2 4e-11 >seq444815 Length=5597 Score = 659 bits (730), Expect = 0.0 Identities = 509/600 (85%), Gaps = 20/600 (3%) Strand=Plus/Plus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||| ||| |||||| |||||||| ||||||| ||| |||| ||||| || ||||||| Sbjct 2706 TCGACGACGAAGCTTA-TCCCCCGCCGTCTCACTGCCACGCTA-CACTTGCCAGCATTCG 2763 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTACCTCCG 120 |||||||| |||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 2764 GAGTTTGGCTGATTTCGGTAAGCCGATAAGCCCCCTAGACCATCCAGTGCTCTACCTCCA 2823 Query 121 GGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGT 180 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 2824 ACAAGAACCACGCAACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGGTGT 2883 Query 181 TTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTT 240 ||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||| Sbjct 2884 TTGATTGGCCTTTCACCCCTATCCACAACTCATCCCCTCCATTTTCAACTGAAGTGGGTT 2943 Query 241 CGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTC 300 ||| |||||||| |||||||| ||||||| |||| ||||||||||||||| |||||| Sbjct 2944 CGGACCTCCACGACGTCTTACCGACGCTTCATCCTGGCCATGGATAGATCACACCGCTTC 3003 Query 301 GGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCA 360 |||||| || | || |||| ||||||| |||||||||||||||||||| || ||||| Sbjct 3004 GGGTCTAGAACACGCGACTC--ACGCCCTTATCGGACTCGCTTTCGCTACGACTCCCCCA 3061 Query 361 -CACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCC 419 |||||||||||||||| || || | | |||||||||||||||||||||||||||||||| Sbjct 3062 CCACGGGTTAACCTCGCCACGCATCACTAACTCGCAGGCTCATTCTTCAAAAGGCACGCC 3121 Query 420 GTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGT 479 ||||| || | || |||| ||||| ||| | || ||||||||| Sbjct 3122 ATCACC----AC---ACAG--------GCTCTGACGGCTTGCATGCGACCGGTTTCAGGA 3166 Query 480 ACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTAT 539 ||| ||||||||||| || ||||||||||||||| ||||||||||||||| ||| |||| Sbjct 3167 ACTCTTTCACTCCCCTCCCGGGGTACTTTTCACCCTTCCCTCACGGTACTCATCCACTAT 3226 Query 540 CGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| || Sbjct 3227 CGGTCACCAAGGAGTATTTAGGCTTGACGGGTGGTCCCGCCAGATTCACGCGAAATTCCA 3286 >seq366117 Length=3063 Score = 336 bits (372), Expect = 8e-90 Identities = 388/513 (76%), Gaps = 31/513 (6%) Strand=Plus/Plus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAA-GCTTGTGGGCCCCCTAGACCATCCAGTGCT 111 || ||||||||||||||| | | |||| ||| | | ||| | ||||||||||||| Sbjct 2572 GGTATTCGGAGTTTGGTTAGTATTGGTACCGCTCGCGCAGCCCGCA-ACCATCCAGTGCT 2630 Query 112 CTACCTCCGGGAAGAAACACGC--GACGCTGCACCTAAATGCATTTCGGGGAGAACCAGC 169 ||||| || ||| || || |||||| |||||||| |||||| ||||||||||| Sbjct 2631 CTACCCCCC--AAGGAATTCGTCGGACGCTCTACCTAAATAGATTTCGCGGAGAACCAGC 2688 Query 170 TATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAAC 229 ||| | | ||||||||||||||||||||||||||||| |||||||| | |||||||| Sbjct 2689 TATGTCCAGGTTTGATTGGCCTTTCACCCCTATCCACAAGTCATCCCAGAATTTTTCAAC 2748 Query 230 CTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGAT 289 | ||||||||||||||| ||| |||||| ||||||||||| ||||||||||| Sbjct 2749 ATTCACGGGTTCGGTCCTCCAGTTGGTGTTACCCAACCTTCAACCTGCTCATGGATAGAT 2808 Query 290 CACTTCGCTTCGGGTCTTGAT-CGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCT 348 ||| | | |||||||| | || ||| ||| | |||||||||| |||||||||||||| Sbjct 2809 CACCTGGTTTCGGGTCGTCATACGTCGAACTTAG-CGCCCTATTCAGACTCGCTTTCGCT 2867 Query 349 ACGGCTACCCCACACGGGTTAACCTCGC--GACACAACGCAAACTCGCAGGCTCATTCTT 406 || |||| || |||| |||| || || |||||| || |||| | | |||| | Sbjct 2868 GCGCCTACACCTAACGGCTTAAGCTTGCTCGACACATG---AAGTCGCTGACCCATTATA 2924 Query 407 CAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTT--CAGCTCCGACGGATTGTAGG 464 ||||||| ||||||||||| || ||| | |||||||| | ||||||| Sbjct 2925 CAAAAGGTACGCCGTCACC-------------GCGCTTGGCGGCTCCGACTGCTTGTAGG 2971 Query 465 CACATGGTTTCAGGTACTATTTCACTCCCC--GCCAGGGGTACTTTTCACCTTTCCCTCA 522 | | ||||||| || ||||||||||| | | ||||| |||||||||||||||||| Sbjct 2972 CTTCCGATTTCAGGATCTGTTTCACTCCCCTTGTC-GGGGTGCTTTTCACCTTTCCCTCA 3030 Query 523 CGGTACTTGTCCGCTATCGGTCACCAAGGAGTA 555 |||||||||| | ||||||||| ||||||| Sbjct 3031 CGGTACTTGTTCACTATCGGTCGTAGAGGAGTA 3063 >seq2636106 Length=238 Score = 170 bits (188), Expect = 7e-40 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 91 CCCCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATG 150 |||||||| | |||||||||||| || | | | | ||| || |||||||| Sbjct 205 CCCCCTAGCCTTAACAGTGCTCTACCCCCAGTAGTATTCGTCCGAGGCGCTACCTAAATA 146 Query 151 CATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGT 210 ||||||||||||||||||||| | | ||||||||||||||||||||||| ||||| || Sbjct 145 GCTTTCGGGGAGAACCAGCTATCTCCAGGTTTGATTGGCCTTTCACCCCTAGCCACAAGT 86 Query 211 CATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTC 270 ||||| || | |||||||| | ||| |||||||||||||| | | |||| | |||| Sbjct 85 CATCCGCTAATTTTTCAACATTAGTCGGTTCGGTCCTCCAGTTGATGTTACTCAACCTTC 26 Query 271 AACCTGCCCATGGATAGATCAC 292 ||||||||||||| |||||||| Sbjct 25 AACCTGCCCATGGCTAGATCAC 4 >seq341544 Length=690 Score = 161 bits (178), Expect = 3e-37 Identities = 125/149 (84%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 |||||||||||||||||||||||||||| || |||||| | ||||||||||||||||| Sbjct 421 ACGCTGCACCTAAATGCATTTCGGGGAGTACGAGCTATTTCCGAGTTTGATTGGCCTTTC 362 Query 195 ACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCG 254 ||||||| ||||||||||||| | |||||||| | | ||||||||||||||| Sbjct 361 ACCCCTACCCACAGGTCATCCAAAGACTTTTCAACGTCAACTGGTTCGGTCCTCCACTGT 302 Query 255 GTCTTACCCGCGCTTCAACCTGCCCATGG 283 || ||||| |||||||||||||||||| Sbjct 301 GTGTTACCACAGCTTCAACCTGCCCATGG 273 Score = 159 bits (176), Expect = 1e-36 Identities = 154/197 (78%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 395 AGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGAC 454 ||||||||| | |||||||||||||||||| || ||| | ||| |||| Sbjct 196 AGGCTCATTATGCAAAAGGCACGCCGTCACACAGT---TAA--------TGTGCTTCGAC 148 Query 455 GGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAG-GGGTACTTTTCACC 513 | |||||||| | |||||||||| || |||||||||| | |||| ||||||||| Sbjct 147 CGCTTGTAGGCGTACGGTTTCAGGTTCTCTTTCACTCCCTTACTTAGGGTTCTTTTCACC 88 Query 514 TTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGG 573 ||||||||||||||||||| | ||||||||| |||||||||||| |||| ||| ||| Sbjct 87 TTTCCCTCACGGTACTTGTTCACTATCGGTCTTTCAGGAGTATTTAGCCTTAGCGGATGG 28 Query 574 TCCCGCCAGATTCACAC 590 |||||||||||||| || Sbjct 27 TCCCGCCAGATTCATAC 11 >seq2892277 Length=395 Score = 116 bits (128), Expect = 1e-23 Identities = 125/165 (76%), Gaps = 3/165 (2%) Strand=Plus/Plus Query 146 AAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCA 205 |||| |||||| || |||||||||| | |||||||||| |||||||||||||| ||| Sbjct 23 AAATATATTTCGCAGAAAACCAGCTATTCCTAAGTTTGATTAGCCTTTCACCCCTAACCA 82 Query 206 CAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACC--- 262 || |||||||| | |||||||| | |||||| ||||| || | ||||| Sbjct 83 CAAGTCATCCCAACCTTTTTCAACAGATACGGGTTCAGTCCTTCAAATTATGTTACCATA 142 Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTT 307 |||||||||| ||||| |||||||||| ||||||||| || Sbjct 143 AATTTTTCAACCTGCTCATGGTTAGATCACTTAGCTTCGGGTTTT 187 >seq338761 Length=448 Score = 109 bits (120), Expect = 2e-21 Identities = 107/137 (78%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 222 TTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCAT 281 |||||||| | ||||||||||| |||||| | || ||||| ||||| |||| |||| Sbjct 305 TTTTCAACATTAGTGGGTTCGGACCTCCAGGGCGTGTTACCGCACCTTCATCCTGGCCAT 364 Query 282 GGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGC 341 || |||||||||| | ||||||||| | | || ||| |||||| |||||||||| Sbjct 365 GGGTAGATCACTTGGTTTCGGGTCTACACCCAGCGACT--GTCGCCCTGTTCGGACTCGA 422 Query 342 TTTCGCTACGGCTACCC 358 |||| |||||||| ||| Sbjct 423 TTTCTCTACGGCTCCCC 439 Score = 78.8 bits (86), Expect = 3e-12 Identities = 120/162 (74%), Gaps = 8/162 (5%) Strand=Plus/Plus Query 40 GCTCTCACTTCCCGGCATTCGGAGTTTGGT-TGATTTCGGTAAG-CTTGTGGGCCCCCTA 97 |||| |||| ||| |||||||||||| || ||| |||||| | | ||||||| Sbjct 39 GCTCGCACTCATCGGTATTCGGAGTTTGCAATGGTTT-GGTAAGTCGCAATGACCCCCTA 97 Query 98 GACCATC-CAGTGCTCTACCTCCGG-GAAGAAACACGCGACGCTGCACCTAAATGCATTT 155 | |||| |||||||||||| ||| | || || | | | || |||||||| ||| Sbjct 98 G-CCATAACAGTGCTCTACCCCCGATGGTGATACTTGAGGCACT--ACCTAAATAGTTTT 154 Query 156 CGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACC 197 ||| ||||||||||||| | ||||||| || |||||||||| Sbjct 155 CGGAGAGAACCAGCTATTTCCAAGTTTGTTTAGCCTTTCACC 196 >seq369036 Length=1182 Score = 96.9 bits (106), Expect = 1e-17 Identities = 85/105 (81%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 484 TTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGG 542 ||||||||||| | ||||||| |||||| |||||||||||||||||| || | ||||||| Sbjct 1 TTTCACTCCCCTCACAGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGG 60 Query 543 TCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCA 587 ||| | ||||||||| ||| || ||||||| ||| |||| Sbjct 61 TCAATTGGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATCTTCA 105 >seq226038 Length=3643 Score = 75.2 bits (82), Expect = 4e-11 Identities = 70/89 (79%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 472 TTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTG 531 ||||||||||| ||| |||| | || ||||||| ||||||||||||||||||| Sbjct 518 TTTCAGGTACTGTTTAACTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTG 459 Query 532 TCCGCTATCGGTCACCAAGGAGTATTTAG 560 | ||||||||||| || | | ||||||| Sbjct 458 TTCGCTATCGGTCTCCCACCAATATTTAG 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1762954619392