Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq366117 253 5e-65 seq444815 208 2e-51 seq341544 183 7e-44 seq369036 168 2e-39 seq2636106 96.9 8e-18 >seq366117 Length=3063 Score = 253 bits (280), Expect = 5e-65 Identities = 270/345 (78%), Gaps = 10/345 (3%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || ||||||| ||||| || | ||||||||| | ||||||||||||||||| | Sbjct 2717 CCTATCCACAAGTCATCCCAGAA--TTTTTCAACATTCACGGGTTCGGTCCTCCAGTTGG 2774 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||||||||||| |||||||| ||| ||||||||| || ||||| |||||| | Sbjct 2775 T-GTTACCCAACCTT-CAACCTGCTCAT-GGATAGATCACCTGGTTT-CGGGTCGTCATA 2830 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAA 182 | ||| ||||||| | ||||||||||| |||| ||||| | |||| | |||| Sbjct 2831 CGTCGAACTTAGCGCCCTATTCAGACTCGCTTT-CGCTGCGCCTACACCTAACGGCTTAA 2889 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 |||| || | | ||||||||||||||||||||||||||||||| |||||| | Sbjct 2890 GCTT-GCTCGACACATGAAGTCGCTGACCCATTATACAAAAGGTACGCCGTCACCGCGCT 2948 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 | || |||| |||||||||| || | || ||||||||||| |||||||||||| || Sbjct 2949 TGGCGG-CTCCGACTGCTTGTAGGCTTCCGATTTCAGGATCTGTTTCACTCCCCTTGTCG 3007 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTC 347 |||| |||||| |||||||||||||||||| |||||||||||||| Sbjct 3008 GGGTGCTTTTCACCTTTCCCTCACGGTACTTGTTCACTATCGGTC 3052 >seq444815 Length=5597 Score = 208 bits (230), Expect = 2e-51 Identities = 289/389 (74%), Gaps = 17/389 (4%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || ||||||| |||| || || | |||||||| | ||| ||||||| |||||| | Sbjct 2901 CCTATCCACAACTCATCCC-CTC-CATTTTCAACTGAAGTGGGTTCGGACCTCCACGACG 2958 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||| | ||| || |||| |||| ||||||||| | | | || |||||||| | Sbjct 2959 TC-TTACCGACGCTT-CATCCTGGCCAT-GGATAGATCACACCGCTT-CGGGTCTAGAAC 3014 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATT-CGGTTAA 182 | |||||| ||||||| | |||||||||| ||||||| |||||| | ||| | | Sbjct 3015 AC-GCGACTC-ACGCCCTTATCGGACTCGCTTT-CGCTACGACTCCCCCACCACGGGTTA 3071 Query 183 GCTTTGCCACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAAC 241 | | ||||| | | ||| |||| | | |||| | ||||||| |||| ||||| || Sbjct 3072 ACCTCGCCACGCATCACTAACTCGCAGGCTCATTCTTCAAAAGGCACGCCATCACCACAC 3131 Query 242 AAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 | ||||| || ||||| | || ||||||||||| || ||||||||||||| || Sbjct 3132 A-----GGCTCTGACGGCTTGCATGCGACCGGTTTCAGGAACTCTTTCACTCCCCTC-CC 3185 Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 ||||| |||||| || ||||||||||||||| | |||||||||||| || ||||||| Sbjct 3186 GGGGTACTTTTCACCCTTCCCTCACGGTACTCATCCACTATCGGTCACCAAGGAGTATTT 3245 Query 362 AGCCTTGGAGGATGGTCCCCCCATATTCA 390 || |||| || ||||||| ||| ||||| Sbjct 3246 AGGCTTGACGGGTGGTCCCGCCAGATTCA 3274 >seq341544 Length=690 Score = 183 bits (202), Expect = 7e-44 Identities = 151/183 (83%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 212 CATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATAC 271 |||||| ||||||| |||| ||||| || || || ||| | || ||||||| || ||| Sbjct 191 CATTATGCAAAAGGCACGCCGTCACACAGTTAA-TGTGCTTCGACCGCTTGTAGGCGTAC 133 Query 272 GGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTAC 331 ||||||||| ||| |||||||||| | ||||||||||| ||||||||||||||||| Sbjct 132 GGTTTCAGGTTCTCTTTCACTCCCTTACTTAGGGTTCTTTTCACCTTTCCCTCACGGTAC 73 Query 332 TAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAG 391 | |||||||||||||| |||| ||||||||||||| | |||||||||| ||| ||||| Sbjct 72 TTGTTCACTATCGGTCTTTCAGGAGTATTTAGCCTTAGCGGATGGTCCCGCCAGATTCAT 13 Query 392 ACA 394 ||| Sbjct 12 ACA 10 >seq369036 Length=1182 Score = 168 bits (186), Expect = 2e-39 Identities = 117/133 (88%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 286 TTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGG 345 ||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 TTTCACTCCCCTCACAGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGG 60 Query 346 TCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGT 405 ||| | ||||||||||||||||||||||||||||||||| ||||| ||| | | ||| Sbjct 61 TCAATTGGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATCTTCAGTCAAGATAACACGT 120 Query 406 GCTCCGTCCTACT 418 | ||| |||||| Sbjct 121 GTCCCGACCTACT 133 >seq2636106 Length=238 Score = 96.9 bits (106), Expect = 8e-18 Identities = 83/96 (86%), Gaps = 5/96 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| ||||| ||||||| ||||||||| |||||||||||||||||||||| | ||| Sbjct 93 CCACAAGTCAT-CCGCTAA-TTTTTCAACATTAGTCGGTTCGGTCCTCCAGTT-GATGTT 37 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCC 104 || ||||| |||||||||||||| || |||||| || Sbjct 36 ACTCAACC-TTCAACCTGCCCAT-GGCTAGATCACC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1204271817472