Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10]
3,006,458 sequences; 949,333,185 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq3002212 242 7e-62
seq444815 219 8e-55
seq2666731 203 6e-50
seq2385878 172 1e-40
seq2826223 149 1e-33
>seq3002212
Length=1337
Score = 242 bits (268), Expect = 7e-62
Identities = 239/306 (78%), Gaps = 17/306 (6%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||||| ||||| |||| ||||||| |||| || |||||||||||||||||||||
Sbjct 779 GGCATGGCTGCGTCAGGCTTTCGCCCATTGCGCAAGATTCCCCACTGCTGCCTCCCGTAG 720
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
|||| ||||||||||||||||||||||||||| | ||| |||||||| || ||||| |||
Sbjct 719 GAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 660
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
||||| ||||||| || ||| ||||||||||| |||||| | |||| ||| |||
Sbjct 659 CGTCGCCTTGGTGAGCCTTTACCTCACCAACTAGCTAATCAGACGCGGGCCGCTCTAAAG 600
Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240
||||||||||||| | ||| | || ||||| ||||||||||
Sbjct 599 GCGATAAATCTTT--CCCCCGAAGG--GC---------ACATT---CGGTATTAGCACAA 556
Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300
|||||| |||||||| | ||||||| ||| | ||||||||||||||||||||||
Sbjct 555 GTTTCCCTGAGTTATTCCGAACCTAAAGGCACGTT-CCCACGTGTTACTCACCCGTCCGC 497
Query 301 CACTAA 306
||||||
Sbjct 496 CACTAA 491
>seq444815
Length=5597
Score = 219 bits (242), Expect = 8e-55
Identities = 234/306 (76%), Gaps = 5/306 (2%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||||| ||||||||||| || | ||||||||||||||| |||||||||||||||||||||
Sbjct 5110 GGCGTTGCTGCATCAGGCTTCCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 5169
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||| |||||||||||||||||||| ||| |||||||| ||||||||| |
Sbjct 5170 GAGTCTGGGCCGTATCTCAGTCCCAATGTGGCCGGTCACCCTCTCAGGCCGGCTACCCGT 5229
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| | |||||| || | || | ||||||| | || || |||||||| ||||| |
Sbjct 5230 CAAAGCCTTGGTAAGCCACTACCCCACCAACAAGCTGATAAGCCGCGAGTCCATCCCCAA 5289
Query 181 GCGATAAATCTTTGGTCAA--AGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGT 238
|| || |||| ||| | ||| || | | ||| ||||||||||
Sbjct 5290 CCGCCGAAACTTT--CCAACCCCCACCATG-CAGCAGGAGCTCCTATCCGGTATTAGCCC 5346
Query 239 TCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCC 298
|||||| | ||||| ||| | || |||||||| |||||||||||||||||||| |
Sbjct 5347 CAGTTTCCTGAAGTTATCCCAAAGTCAAGGGCAGGTTACTCACGTGTTACTCACCCGTTC 5406
Query 299 GCCACT 304
||||||
Sbjct 5407 GCCACT 5412
>seq2666731
Length=247
Score = 203 bits (224), Expect = 6e-50
Identities = 141/160 (88%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GGCATGGCTGCATCAGGGTTTCCCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 120
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
|||||||| |||||||||||| ||| |||||| | ||| |||||||| || |||| |||
Sbjct 121 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAGACCAGCTAGGGAT 180
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160
||||| ||||||| || ||| ||||||||||| ||||||
Sbjct 181 CGTCGCCTTGGTGAGCCCTTACCTCACCAACTAGCTAATC 220
>seq2385878
Length=192
Score = 172 bits (190), Expect = 1e-40
Identities = 145/178 (81%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| ||||||||| |||||||||| || || |||||||||||||||||||||
Sbjct 180 GGCATGGCTAGATCAGGGTTGCCCCCATTGTCTAAGATTCCCCACTGCTGCCTCCCGTAG 121
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| ||| || | ||| ||||| | || |||| |||
Sbjct 120 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTTGCTGATCATCCTCTAAAACCAGCTATAGAT 61
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTT 178
||| | |||||| ||| |||| | ||||||||| |||||| |||| ||| ||| ||
Sbjct 60 CGTAGACTTGGTAGGCCATTACCCCACCAACTATCTAATCTAACGCGGGCCAATCCTT 3
>seq2826223
Length=326
Score = 149 bits (164), Expect = 1e-33
Identities = 139/177 (79%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | |||| ||||| ||| || ||||||| |||||| || ||||||||||||||||||
Sbjct 25 GGCATGGCTGGATCAGAGTTGCCTCCATTGTCCAATATTCCTCACTGCTGCCTCCCGTAG 84
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
|||||||| |||||||||||| ||| ||||| | || |||||||| | ||||| ||
Sbjct 85 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCCCCCTCTCAGGGCCCCTACCTAT 144
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTT 177
||| | |||||| || ||| || |||||| | ||||| || ||| | ||||||
Sbjct 145 CGTAGTCTTGGTAAGCCGTTACCTTACCAACAAACTAATAGGACGCATACTCATCTT 201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 968383523328
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |